JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MCOLN2_chr1_84920583_85002113	0/0	t0022	1344	1	0	0	1	0	0	copy fasta	MCOLN2	chr1	84920583	85002113
MCOLN2_chr1_84920583_85002113	0/0	t0023	1344	1	0	0	1	0	0	copy fasta	MCOLN2	chr1	84920583	85002113
MCOLN2_chr1_84920583_85002113	0/0	t0024	1343	1	0	0	1	0	0	copy fasta	MCOLN2	chr1	84920583	85002113
MCOLN2_chr1_84920583_85002113	0/0	t0025	1344	1	0	1	0	0	0	copy fasta	MCOLN2	chr1	84920583	85002113
MCOLN2_chr1_84920583_85002113	0/0	t0026	1345	1	1	0	0	0	0	copy fasta	MCOLN2	chr1	84920583	85002113
MCOLN2_chr1_84920583_85002113	0/0	t0027	1345	1	0	0	1	0	0	copy fasta	MCOLN2	chr1	84920583	85002113
MCOLN2_chr1_84920583_85002113	0/0	t0028	1345	1	1	0	0	0	0	copy fasta	MCOLN2	chr1	84920583	85002113
MCOLN2_chr1_84920583_85002113	0/0	t0029	1344	1	0	0	1	0	0	copy fasta	MCOLN2	chr1	84920583	85002113
MCOLN2_chr1_84920583_85002113	0/0	t0030	1344	1	0	1	0	0	0	copy fasta	MCOLN2	chr1	84920583	85002113
MCOLN2_chr1_84920583_85002113	0/0	t0031	1345	1	1	0	0	0	0	copy fasta	MCOLN2	chr1	84920583	85002113
MCOLN2_chr1_84920583_85002113	0/0	t0032	1344	1	1	0	0	0	0	copy fasta	MCOLN2	chr1	84920583	85002113
MCOLN2_chr1_84920583_85002113	0/0	t0033	1345	1	0	0	1	0	0	copy fasta	MCOLN2	chr1	84920583	85002113
MCOLN2_chr1_84920583_85002113	0/0	t0034	1344	1	0	0	1	0	0	copy fasta	MCOLN2	chr1	84920583	85002113
MCOLN2_chr1_84920583_85002113	0/0	t0035	1344	1	1	0	0	0	0	copy fasta	MCOLN2	chr1	84920583	85002113
MCOLN3_chr1_85013082_85053500	0/0	t0001	1149	126	26	21	60	7	12	copy fasta	MCOLN3	chr1	85013082	85053500
MCOLN3_chr1_85013082_85053500	1/0	t0002	1149	95	18	22	43	5	6	copy fasta	MCOLN3	chr1	85013082	85053500
MCOLN3_chr1_85013082_85053500	0/1	t0003	1149	83	18	10	41	2	11	copy fasta	MCOLN3	chr1	85013082	85053500
MCOLN3_chr1_85013082_85053500	0/0	t0004	1149	29	2	1	26	0	0	copy fasta	MCOLN3	chr1	85013082	85053500
MCOLN3_chr1_85013082_85053500	0/0	t0005	1149	27	15	9	0	1	2	copy fasta	MCOLN3	chr1	85013082	85053500
MCOLN3_chr1_85013082_85053500	0/0	t0006	1149	4	0	3	0	1	0	copy fasta	MCOLN3	chr1	85013082	85053500
MCOLN3_chr1_85013082_85053500	0/0	t0007	1149	1	0	0	1	0	0	copy fasta	MCOLN3	chr1	85013082	85053500
MCOLN3_chr1_85013082_85053500	0/0	t0008	1149	1	0	0	1	0	0	copy fasta	MCOLN3	chr1	85013082	85053500
MCOLN3_chr1_85013082_85053500	0/0	t0009	1149	1	0	0	1	0	0	copy fasta	MCOLN3	chr1	85013082	85053500
MCOLN3_chr1_85013082_85053500	0/0	t0010	1159	1	0	0	1	0	0	copy fasta	MCOLN3	chr1	85013082	85053500
MCOLN3_chr1_85013082_85053500	0/0	t0011	1149	1	0	0	0	0	1	copy fasta	MCOLN3	chr1	85013082	85053500
MCOLN3_chr1_85013082_85053500	0/0	t0012	1149	1	1	0	0	0	0	copy fasta	MCOLN3	chr1	85013082	85053500
MCPH1_chr8_6401627_6653508	1/1	t0001	5501	53	5	14	18	5	9	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	t0002	5503	32	2	3	25	0	2	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	t0003	5494	19	0	2	15	0	2	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	t0004	5502	16	16	0	0	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	t0005	5502	13	1	0	10	0	2	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	t0006	5499	10	0	2	4	0	4	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	t0007	5499	8	6	0	2	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	t0008	5504	5	0	1	4	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	t0009	5501	5	3	2	0	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	t0010	5495	5	0	5	0	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	t0011	5502	4	2	0	2	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	t0012	5501	4	0	1	3	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	t0013	5503	3	0	0	3	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	t0014	5501	3	0	0	0	1	2	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	t0015	5496	3	3	0	0	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	t0016	5502	3	3	0	0	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	t0017	5500	3	0	0	1	0	2	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	t0018	5502	3	3	0	0	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	t0019	5502	2	2	0	0	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	t0020	5503	2	0	0	2	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	t0021	5503	2	0	0	2	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	t0022	5502	2	2	0	0	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	t0023	5501	2	2	0	0	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	t0024	5501	2	0	2	0	0	0	copy fasta	MCPH1	chr8	6401627	6653508