Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ARFRP1_chr20_63693647_63712976	0/0	t0009	1913	1	1	0	0	0	0	copy fasta	ARFRP1	chr20	63693647	63712976
ARFRP1_chr20_63693647_63712976	0/0	t0010	1905	1	0	0	0	0	1	copy fasta	ARFRP1	chr20	63693647	63712976
ARFRP1_chr20_63693647_63712976	0/0	t0011	1905	1	1	0	0	0	0	copy fasta	ARFRP1	chr20	63693647	63712976
ARFRP1_chr20_63693647_63712976	0/0	t0012	1905	1	0	0	1	0	0	copy fasta	ARFRP1	chr20	63693647	63712976
ARFRP1_chr20_63693647_63712976	0/0	t0013	1913	1	1	0	0	0	0	copy fasta	ARFRP1	chr20	63693647	63712976
ARFRP1_chr20_63693647_63712976	0/0	t0014	1913	1	0	0	0	1	0	copy fasta	ARFRP1	chr20	63693647	63712976
ARFRP1_chr20_63693647_63712976	0/0	t0015	1913	1	0	1	0	0	0	copy fasta	ARFRP1	chr20	63693647	63712976
ARFRP1_chr20_63693647_63712976	0/0	t0016	1913	1	1	0	0	0	0	copy fasta	ARFRP1	chr20	63693647	63712976
ARFRP1_chr20_63693647_63712976	0/0	t0017	1913	1	0	0	1	0	0	copy fasta	ARFRP1	chr20	63693647	63712976
ARFRP1_chr20_63693647_63712976	0/0	t0018	1913	1	0	0	0	1	0	copy fasta	ARFRP1	chr20	63693647	63712976
ARFRP1_chr20_63693647_63712976	0/0	t0019	1913	1	1	0	0	0	0	copy fasta	ARFRP1	chr20	63693647	63712976
ARFRP1_chr20_63693647_63712976	0/0	t0020	1913	1	0	0	0	0	1	copy fasta	ARFRP1	chr20	63693647	63712976
ARFRP1_chr20_63693647_63712976	0/0	t0021	1913	1	0	1	0	0	0	copy fasta	ARFRP1	chr20	63693647	63712976
ARFRP1_chr20_63693647_63712976	0/0	t0022	1913	1	1	0	0	0	0	copy fasta	ARFRP1	chr20	63693647	63712976
ARFRP1_chr20_63693647_63712976	0/0	t0023	1913	1	1	0	0	0	0	copy fasta	ARFRP1	chr20	63693647	63712976
ARG1_chr6_131568226_131589329	1/1	t0001	479	419	92	64	203	16	42	copy fasta	ARG1	chr6	131568226	131589329
ARG1_chr6_131568226_131589329	0/0	t0002	479	1	0	0	1	0	0	copy fasta	ARG1	chr6	131568226	131589329
ARG2_chr14_67614920_67656708	1/1	t0001	847	242	38	56	100	12	34	copy fasta	ARG2	chr14	67614920	67656708
ARG2_chr14_67614920_67656708	0/0	t0002	846	87	17	14	50	2	4	copy fasta	ARG2	chr14	67614920	67656708
ARG2_chr14_67614920_67656708	0/0	t0003	846	79	14	13	46	2	4	copy fasta	ARG2	chr14	67614920	67656708
ARG2_chr14_67614920_67656708	0/0	t0004	844	19	19	0	0	0	0	copy fasta	ARG2	chr14	67614920	67656708
ARG2_chr14_67614920_67656708	0/0	t0005	847	7	7	0	0	0	0	copy fasta	ARG2	chr14	67614920	67656708
ARG2_chr14_67614920_67656708	0/0	t0006	850	3	3	0	0	0	0	copy fasta	ARG2	chr14	67614920	67656708
ARG2_chr14_67614920_67656708	0/0	t0007	847	1	0	1	0	0	0	copy fasta	ARG2	chr14	67614920	67656708
ARGFX_chr3_121562949_121595622	1/1	t0001	4100	125	20	39	42	7	15	copy fasta	ARGFX	chr3	121562949	121595622
ARGFX_chr3_121562949_121595622	0/0	t0002	4098	89	15	7	59	2	6	copy fasta	ARGFX	chr3	121562949	121595622
ARGFX_chr3_121562949_121595622	0/0	t0003	4099	32	1	11	11	3	6	copy fasta	ARGFX	chr3	121562949	121595622
ARGFX_chr3_121562949_121595622	0/0	t0004	4100	19	1	7	8	1	2	copy fasta	ARGFX	chr3	121562949	121595622
ARGFX_chr3_121562949_121595622	0/0	t0005	4099	17	4	0	10	0	3	copy fasta	ARGFX	chr3	121562949	121595622
ARGFX_chr3_121562949_121595622	0/0	t0006	4101	13	1	4	7	0	1	copy fasta	ARGFX	chr3	121562949	121595622
ARGFX_chr3_121562949_121595622	0/0	t0007	4549	12	10	1	1	0	0	copy fasta	ARGFX	chr3	121562949	121595622
ARGFX_chr3_121562949_121595622	0/0	t0008	4092	9	9	0	0	0	0	copy fasta	ARGFX	chr3	121562949	121595622
ARGFX_chr3_121562949_121595622	0/0	t0009	4101	9	1	5	0	2	1	copy fasta	ARGFX	chr3	121562949	121595622
ARGFX_chr3_121562949_121595622	0/0	t0010	4100	5	5	0	0	0	0	copy fasta	ARGFX	chr3	121562949	121595622
ARGFX_chr3_121562949_121595622	0/0	t0011	4100	4	0	0	3	0	1	copy fasta	ARGFX	chr3	121562949	121595622
ARGFX_chr3_121562949_121595622	0/0	t0012	4099	4	4	0	0	0	0	copy fasta	ARGFX	chr3	121562949	121595622
ARGFX_chr3_121562949_121595622	0/0	t0013	4101	4	1	0	3	0	0	copy fasta	ARGFX	chr3	121562949	121595622
ARGFX_chr3_121562949_121595622	0/0	t0014	4101	4	4	0	0	0	0	copy fasta	ARGFX	chr3	121562949	121595622
ARGFX_chr3_121562949_121595622	0/0	t0015	4100	4	0	0	4	0	0	copy fasta	ARGFX	chr3	121562949	121595622
ARGFX_chr3_121562949_121595622	0/0	t0016	4100	3	0	0	2	0	1	copy fasta	ARGFX	chr3	121562949	121595622
ARGFX_chr3_121562949_121595622	0/0	t0017	4101	3	0	1	2	0	0	copy fasta	ARGFX	chr3	121562949	121595622
ARGFX_chr3_121562949_121595622	0/0	t0018	4099	3	3	0	0	0	0	copy fasta	ARGFX	chr3	121562949	121595622
ARGFX_chr3_121562949_121595622	0/0	t0019	4099	3	1	0	2	0	0	copy fasta	ARGFX	chr3	121562949	121595622
ARGFX_chr3_121562949_121595622	0/0	t0020	4100	3	3	0	0	0	0	copy fasta	ARGFX	chr3	121562949	121595622
ARGFX_chr3_121562949_121595622	0/0	t0021	4100	2	0	0	0	0	2	copy fasta	ARGFX	chr3	121562949	121595622
ARGFX_chr3_121562949_121595622	0/0	t0022	4099	2	1	0	1	0	0	copy fasta	ARGFX	chr3	121562949	121595622
ARGFX_chr3_121562949_121595622	0/0	t0023	4098	2	2	0	0	0	0	copy fasta	ARGFX	chr3	121562949	121595622
ARGFX_chr3_121562949_121595622	0/0	t0024	4102	2	0	0	2	0	0	copy fasta	ARGFX	chr3	121562949	121595622
ARGFX_chr3_121562949_121595622	0/0	t0025	4100	2	0	2	0	0	0	copy fasta	ARGFX	chr3	121562949	121595622
ARGFX_chr3_121562949_121595622	0/0	t0026	4099	2	2	0	0	0	0	copy fasta	ARGFX	chr3	121562949	121595622