JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MCPH1_chr8_6401627_6653508	0/0	t0025	5501	2	2	0	0	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	t0026	5499	2	0	0	0	0	2	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	t0027	5502	2	2	0	0	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	t0028	5502	2	0	0	0	0	2	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	t0029	5502	2	2	0	0	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	t0030	5496	1	1	0	0	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	t0031	5501	1	1	0	0	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	t0032	5502	1	1	0	0	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	t0033	5499	1	0	1	0	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	t0034	5504	1	0	0	1	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	t0035	5503	1	0	0	1	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	t0036	5502	1	1	0	0	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	t0037	5502	1	1	0	0	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	t0038	5501	1	0	0	0	1	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	t0039	5500	1	0	0	1	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	t0040	5504	1	1	0	0	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	t0041	5503	1	0	0	1	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	t0042	5503	1	1	0	0	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	t0043	5502	1	1	0	0	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	t0044	5496	1	1	0	0	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	t0045	5498	1	0	0	1	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	t0046	5502	1	0	0	1	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	t0047	5502	1	0	0	1	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	t0048	5502	1	1	0	0	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	t0049	5502	1	0	0	1	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	t0050	5502	1	1	0	0	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	t0051	5502	1	1	0	0	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	t0052	5502	1	1	0	0	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	t0053	5501	1	0	0	1	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	t0054	5495	1	1	0	0	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	t0055	5501	1	0	0	1	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	t0056	5501	1	0	0	0	1	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	t0057	5501	1	0	0	1	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	t0058	5501	1	0	0	1	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	t0059	5501	1	0	0	1	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	t0060	5501	1	0	0	1	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	t0061	5502	1	1	0	0	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	t0062	5503	1	0	0	1	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	t0063	5503	1	0	0	1	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	t0064	5502	1	1	0	0	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	t0065	5501	1	0	1	0	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	t0066	5499	1	0	0	0	0	1	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	t0067	5499	1	0	0	1	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	t0068	5499	1	1	0	0	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	t0069	5500	1	0	0	0	0	1	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	t0070	5502	1	0	0	0	0	1	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	t0071	5502	1	1	0	0	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	t0072	5503	1	1	0	0	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	t0073	5502	1	1	0	0	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	t0074	5501	1	1	0	0	0	0	copy fasta	MCPH1	chr8	6401627	6653508