JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MCPH1_chr8_6401627_6653508	0/0	t0075	5501	1	1	0	0	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	t0076	5503	1	1	0	0	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCPH1_chr8_6401627_6653508	0/0	t0077	5501	1	1	0	0	0	0	copy fasta	MCPH1	chr8	6401627	6653508
MCRIP1_chr17_81817361_81838291	1/1	t0001	989	328	58	80	131	16	41	copy fasta	MCRIP1	chr17	81817361	81838291
MCRIP1_chr17_81817361_81838291	0/0	t0002	989	16	16	0	0	0	0	copy fasta	MCRIP1	chr17	81817361	81838291
MCRIP1_chr17_81817361_81838291	0/0	t0003	989	9	9	0	0	0	0	copy fasta	MCRIP1	chr17	81817361	81838291
MCRIP1_chr17_81817361_81838291	0/0	t0004	989	3	3	0	0	0	0	copy fasta	MCRIP1	chr17	81817361	81838291
MCRIP1_chr17_81817361_81838291	0/0	t0005	989	3	0	0	3	0	0	copy fasta	MCRIP1	chr17	81817361	81838291
MCRIP1_chr17_81817361_81838291	0/0	t0006	989	1	1	0	0	0	0	copy fasta	MCRIP1	chr17	81817361	81838291
MCRIP1_chr17_81817361_81838291	0/0	t0007	989	1	1	0	0	0	0	copy fasta	MCRIP1	chr17	81817361	81838291
MCRIP1_chr17_81817361_81838291	0/0	t0008	989	1	0	0	1	0	0	copy fasta	MCRIP1	chr17	81817361	81838291
MCRIP1_chr17_81817361_81838291	0/0	t0009	989	1	1	0	0	0	0	copy fasta	MCRIP1	chr17	81817361	81838291
MCRIP1_chr17_81817361_81838291	0/0	t0010	989	1	0	0	0	0	1	copy fasta	MCRIP1	chr17	81817361	81838291
MCRIP1_chr17_81817361_81838291	0/0	t0011	989	1	0	0	1	0	0	copy fasta	MCRIP1	chr17	81817361	81838291
MCRIP1_chr17_81817361_81838291	0/0	t0012	989	1	1	0	0	0	0	copy fasta	MCRIP1	chr17	81817361	81838291
MCRIP2_chr16_636828_653474	1/1	t0001	449	351	61	74	154	16	44	copy fasta	MCRIP2	chr16	636828	653474
MCRIP2_chr16_636828_653474	0/0	t0002	449	31	19	2	8	0	2	copy fasta	MCRIP2	chr16	636828	653474
MCRIP2_chr16_636828_653474	0/0	t0003	449	15	0	0	15	0	0	copy fasta	MCRIP2	chr16	636828	653474
MCRIP2_chr16_636828_653474	0/0	t0004	449	13	12	1	0	0	0	copy fasta	MCRIP2	chr16	636828	653474
MCRIP2_chr16_636828_653474	0/0	t0005	449	6	6	0	0	0	0	copy fasta	MCRIP2	chr16	636828	653474
MCRIP2_chr16_636828_653474	0/0	t0006	449	1	0	0	1	0	0	copy fasta	MCRIP2	chr16	636828	653474
MCRIP2_chr16_636828_653474	0/0	t0007	449	1	0	0	1	0	0	copy fasta	MCRIP2	chr16	636828	653474
MCRIP2_chr16_636828_653474	0/0	t0008	449	1	0	1	0	0	0	copy fasta	MCRIP2	chr16	636828	653474
MCRIP2_chr16_636828_653474	0/0	t0009	449	1	0	0	1	0	0	copy fasta	MCRIP2	chr16	636828	653474
MCRS1_chr12_49553299_49573142	1/1	t0001	550	217	31	51	86	11	36	copy fasta	MCRS1	chr12	49553299	49573142
MCRS1_chr12_49553299_49573142	0/0	t0002	550	78	47	11	14	2	4	copy fasta	MCRS1	chr12	49553299	49573142
MCRS1_chr12_49553299_49573142	0/0	t0003	550	7	7	0	0	0	0	copy fasta	MCRS1	chr12	49553299	49573142
MCRS1_chr12_49553299_49573142	0/0	t0004	550	2	2	0	0	0	0	copy fasta	MCRS1	chr12	49553299	49573142
MCRS1_chr12_49553299_49573142	0/0	t0005	550	1	0	0	0	1	0	copy fasta	MCRS1	chr12	49553299	49573142
MCRS1_chr12_49553299_49573142	0/0	t0006	550	1	0	0	1	0	0	copy fasta	MCRS1	chr12	49553299	49573142
MCRS1_chr12_49553299_49573142	0/0	t0007	550	1	1	0	0	0	0	copy fasta	MCRS1	chr12	49553299	49573142
MCRS1_chr12_49553299_49573142	0/0	t0008	550	1	0	0	1	0	0	copy fasta	MCRS1	chr12	49553299	49573142
MCTP1_chr5_94698690_95290094	0/0	t0001	4326	15	5	3	4	1	2	copy fasta	MCTP1	chr5	94698690	95290094
MCTP1_chr5_94698690_95290094	0/0	t0002	4327	12	8	2	1	0	1	copy fasta	MCTP1	chr5	94698690	95290094
MCTP1_chr5_94698690_95290094	0/0	t0003	4331	10	0	1	8	1	0	copy fasta	MCTP1	chr5	94698690	95290094
MCTP1_chr5_94698690_95290094	0/0	t0004	4321	5	5	0	0	0	0	copy fasta	MCTP1	chr5	94698690	95290094
MCTP1_chr5_94698690_95290094	0/0	t0005	4333	5	2	0	0	1	2	copy fasta	MCTP1	chr5	94698690	95290094
MCTP1_chr5_94698690_95290094	0/0	t0006	4331	5	0	0	2	0	3	copy fasta	MCTP1	chr5	94698690	95290094
MCTP1_chr5_94698690_95290094	0/0	t0007	4326	4	2	2	0	0	0	copy fasta	MCTP1	chr5	94698690	95290094
MCTP1_chr5_94698690_95290094	0/0	t0008	4335	3	0	0	3	0	0	copy fasta	MCTP1	chr5	94698690	95290094
MCTP1_chr5_94698690_95290094	0/0	t0009	4320	2	2	0	0	0	0	copy fasta	MCTP1	chr5	94698690	95290094
MCTP1_chr5_94698690_95290094	0/0	t0010	4327	2	0	0	2	0	0	copy fasta	MCTP1	chr5	94698690	95290094
MCTP1_chr5_94698690_95290094	0/0	t0011	4326	2	0	0	2	0	0	copy fasta	MCTP1	chr5	94698690	95290094
MCTP1_chr5_94698690_95290094	0/0	t0012	4338	2	1	0	1	0	0	copy fasta	MCTP1	chr5	94698690	95290094
MCTP1_chr5_94698690_95290094	0/0	t0013	4331	2	2	0	0	0	0	copy fasta	MCTP1	chr5	94698690	95290094
MCTP1_chr5_94698690_95290094	0/0	t0014	4329	2	1	1	0	0	0	copy fasta	MCTP1	chr5	94698690	95290094
MCTP1_chr5_94698690_95290094	0/0	t0015	4625	2	2	0	0	0	0	copy fasta	MCTP1	chr5	94698690	95290094
MCTP1_chr5_94698690_95290094	0/0	t0016	4321	2	2	0	0	0	0	copy fasta	MCTP1	chr5	94698690	95290094
MCTP1_chr5_94698690_95290094	0/0	t0017	4327	1	0	0	1	0	0	copy fasta	MCTP1	chr5	94698690	95290094
MCTP1_chr5_94698690_95290094	0/0	t0018	4325	1	0	1	0	0	0	copy fasta	MCTP1	chr5	94698690	95290094