JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MCTP1_chr5_94698690_95290094	0/0	t0019	4325	1	1	0	0	0	0	copy fasta	MCTP1	chr5	94698690	95290094
MCTP1_chr5_94698690_95290094	0/0	t0020	4322	1	1	0	0	0	0	copy fasta	MCTP1	chr5	94698690	95290094
MCTP1_chr5_94698690_95290094	0/0	t0021	4316	1	1	0	0	0	0	copy fasta	MCTP1	chr5	94698690	95290094
MCTP1_chr5_94698690_95290094	0/0	t0022	4324	1	1	0	0	0	0	copy fasta	MCTP1	chr5	94698690	95290094
MCTP1_chr5_94698690_95290094	0/0	t0023	4320	1	1	0	0	0	0	copy fasta	MCTP1	chr5	94698690	95290094
MCTP1_chr5_94698690_95290094	0/0	t0024	4321	1	1	0	0	0	0	copy fasta	MCTP1	chr5	94698690	95290094
MCTP1_chr5_94698690_95290094	0/0	t0025	4320	1	1	0	0	0	0	copy fasta	MCTP1	chr5	94698690	95290094
MCTP1_chr5_94698690_95290094	0/0	t0026	4331	1	0	1	0	0	0	copy fasta	MCTP1	chr5	94698690	95290094
MCTP1_chr5_94698690_95290094	0/0	t0027	4331	1	1	0	0	0	0	copy fasta	MCTP1	chr5	94698690	95290094
MCTP1_chr5_94698690_95290094	0/0	t0028	4331	1	0	1	0	0	0	copy fasta	MCTP1	chr5	94698690	95290094
MCTP1_chr5_94698690_95290094	0/0	t0029	4327	1	0	0	1	0	0	copy fasta	MCTP1	chr5	94698690	95290094
MCTP1_chr5_94698690_95290094	0/0	t0030	4334	1	1	0	0	0	0	copy fasta	MCTP1	chr5	94698690	95290094
MCTP1_chr5_94698690_95290094	0/0	t0031	4334	1	0	0	1	0	0	copy fasta	MCTP1	chr5	94698690	95290094
MCTP1_chr5_94698690_95290094	0/0	t0032	4328	1	1	0	0	0	0	copy fasta	MCTP1	chr5	94698690	95290094
MCTP1_chr5_94698690_95290094	0/0	t0033	4325	1	0	0	1	0	0	copy fasta	MCTP1	chr5	94698690	95290094
MCTP1_chr5_94698690_95290094	0/0	t0034	4325	1	1	0	0	0	0	copy fasta	MCTP1	chr5	94698690	95290094
MCTP1_chr5_94698690_95290094	0/0	t0035	4326	1	0	0	0	1	0	copy fasta	MCTP1	chr5	94698690	95290094
MCTP1_chr5_94698690_95290094	0/0	t0036	4338	1	0	0	1	0	0	copy fasta	MCTP1	chr5	94698690	95290094
MCTP1_chr5_94698690_95290094	0/0	t0037	4325	1	1	0	0	0	0	copy fasta	MCTP1	chr5	94698690	95290094
MCTP1_chr5_94698690_95290094	0/0	t0038	4326	1	1	0	0	0	0	copy fasta	MCTP1	chr5	94698690	95290094
MCTP1_chr5_94698690_95290094	0/0	t0039	4330	1	1	0	0	0	0	copy fasta	MCTP1	chr5	94698690	95290094
MCTP2_chr15_94226561_94488952	0/0	t0001	5088	72	28	13	17	5	9	copy fasta	MCTP2	chr15	94226561	94488952
MCTP2_chr15_94226561_94488952	1/0	t0002	5088	32	3	10	9	2	7	copy fasta	MCTP2	chr15	94226561	94488952
MCTP2_chr15_94226561_94488952	0/0	t0003	5088	24	1	4	18	1	0	copy fasta	MCTP2	chr15	94226561	94488952
MCTP2_chr15_94226561_94488952	0/0	t0004	5087	19	0	2	17	0	0	copy fasta	MCTP2	chr15	94226561	94488952
MCTP2_chr15_94226561_94488952	0/0	t0005	5091	13	0	1	10	1	1	copy fasta	MCTP2	chr15	94226561	94488952
MCTP2_chr15_94226561_94488952	0/1	t0006	5088	13	2	3	7	0	0	copy fasta	MCTP2	chr15	94226561	94488952
MCTP2_chr15_94226561_94488952	0/0	t0007	5091	12	3	3	4	0	2	copy fasta	MCTP2	chr15	94226561	94488952
MCTP2_chr15_94226561_94488952	0/0	t0008	5091	10	0	2	3	0	5	copy fasta	MCTP2	chr15	94226561	94488952
MCTP2_chr15_94226561_94488952	0/0	t0009	5088	7	3	0	3	0	1	copy fasta	MCTP2	chr15	94226561	94488952
MCTP2_chr15_94226561_94488952	0/0	t0010	5091	5	0	2	3	0	0	copy fasta	MCTP2	chr15	94226561	94488952
MCTP2_chr15_94226561_94488952	0/0	t0011	5087	5	5	0	0	0	0	copy fasta	MCTP2	chr15	94226561	94488952
MCTP2_chr15_94226561_94488952	0/0	t0012	5088	4	3	1	0	0	0	copy fasta	MCTP2	chr15	94226561	94488952
MCTP2_chr15_94226561_94488952	0/0	t0013	5089	4	3	1	0	0	0	copy fasta	MCTP2	chr15	94226561	94488952
MCTP2_chr15_94226561_94488952	0/0	t0014	5088	3	3	0	0	0	0	copy fasta	MCTP2	chr15	94226561	94488952
MCTP2_chr15_94226561_94488952	0/0	t0015	5091	2	0	0	2	0	0	copy fasta	MCTP2	chr15	94226561	94488952
MCTP2_chr15_94226561_94488952	0/0	t0016	5091	2	2	0	0	0	0	copy fasta	MCTP2	chr15	94226561	94488952
MCTP2_chr15_94226561_94488952	0/0	t0017	5087	2	2	0	0	0	0	copy fasta	MCTP2	chr15	94226561	94488952
MCTP2_chr15_94226561_94488952	0/0	t0018	5087	2	1	1	0	0	0	copy fasta	MCTP2	chr15	94226561	94488952
MCTP2_chr15_94226561_94488952	0/0	t0019	5088	2	2	0	0	0	0	copy fasta	MCTP2	chr15	94226561	94488952
MCTP2_chr15_94226561_94488952	0/0	t0020	5088	2	2	0	0	0	0	copy fasta	MCTP2	chr15	94226561	94488952
MCTP2_chr15_94226561_94488952	0/0	t0021	5088	2	0	0	0	0	2	copy fasta	MCTP2	chr15	94226561	94488952
MCTP2_chr15_94226561_94488952	0/0	t0022	5089	2	2	0	0	0	0	copy fasta	MCTP2	chr15	94226561	94488952
MCTP2_chr15_94226561_94488952	0/0	t0023	5088	2	0	2	0	0	0	copy fasta	MCTP2	chr15	94226561	94488952
MCTP2_chr15_94226561_94488952	0/0	t0024	5090	1	1	0	0	0	0	copy fasta	MCTP2	chr15	94226561	94488952
MCTP2_chr15_94226561_94488952	0/0	t0025	5091	1	0	1	0	0	0	copy fasta	MCTP2	chr15	94226561	94488952
MCTP2_chr15_94226561_94488952	0/0	t0026	5091	1	1	0	0	0	0	copy fasta	MCTP2	chr15	94226561	94488952
MCTP2_chr15_94226561_94488952	0/0	t0027	5091	1	0	0	0	0	1	copy fasta	MCTP2	chr15	94226561	94488952
MCTP2_chr15_94226561_94488952	0/0	t0028	5091	1	1	0	0	0	0	copy fasta	MCTP2	chr15	94226561	94488952
MCTP2_chr15_94226561_94488952	0/0	t0029	5091	1	0	1	0	0	0	copy fasta	MCTP2	chr15	94226561	94488952