JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MCTP2_chr15_94226561_94488952	0/0	t0030	5092	1	0	0	0	0	1	copy fasta	MCTP2	chr15	94226561	94488952
MCTP2_chr15_94226561_94488952	0/0	t0031	5091	1	0	0	0	1	0	copy fasta	MCTP2	chr15	94226561	94488952
MCTP2_chr15_94226561_94488952	0/0	t0032	5091	1	1	0	0	0	0	copy fasta	MCTP2	chr15	94226561	94488952
MCTP2_chr15_94226561_94488952	0/0	t0033	5091	1	1	0	0	0	0	copy fasta	MCTP2	chr15	94226561	94488952
MCTP2_chr15_94226561_94488952	0/0	t0034	5091	1	1	0	0	0	0	copy fasta	MCTP2	chr15	94226561	94488952
MCTP2_chr15_94226561_94488952	0/0	t0035	5091	1	1	0	0	0	0	copy fasta	MCTP2	chr15	94226561	94488952
MCTP2_chr15_94226561_94488952	0/0	t0036	5088	1	0	1	0	0	0	copy fasta	MCTP2	chr15	94226561	94488952
MCTP2_chr15_94226561_94488952	0/0	t0037	5088	1	1	0	0	0	0	copy fasta	MCTP2	chr15	94226561	94488952
MCTP2_chr15_94226561_94488952	0/0	t0038	5088	1	1	0	0	0	0	copy fasta	MCTP2	chr15	94226561	94488952
MCTP2_chr15_94226561_94488952	0/0	t0039	5088	1	0	0	0	0	1	copy fasta	MCTP2	chr15	94226561	94488952
MCTP2_chr15_94226561_94488952	0/0	t0040	5088	1	0	0	1	0	0	copy fasta	MCTP2	chr15	94226561	94488952
MCTP2_chr15_94226561_94488952	0/0	t0041	5088	1	0	0	0	1	0	copy fasta	MCTP2	chr15	94226561	94488952
MCTP2_chr15_94226561_94488952	0/0	t0042	5088	1	1	0	0	0	0	copy fasta	MCTP2	chr15	94226561	94488952
MCTP2_chr15_94226561_94488952	0/0	t0043	5088	1	0	0	0	0	1	copy fasta	MCTP2	chr15	94226561	94488952
MCTP2_chr15_94226561_94488952	0/0	t0044	5088	1	0	1	0	0	0	copy fasta	MCTP2	chr15	94226561	94488952
MCTP2_chr15_94226561_94488952	0/0	t0045	5088	1	0	1	0	0	0	copy fasta	MCTP2	chr15	94226561	94488952
MCTP2_chr15_94226561_94488952	0/0	t0046	5088	1	1	0	0	0	0	copy fasta	MCTP2	chr15	94226561	94488952
MCTP2_chr15_94226561_94488952	0/0	t0047	5088	1	1	0	0	0	0	copy fasta	MCTP2	chr15	94226561	94488952
MCTP2_chr15_94226561_94488952	0/0	t0048	5088	1	0	0	0	1	0	copy fasta	MCTP2	chr15	94226561	94488952
MCTP2_chr15_94226561_94488952	0/0	t0049	5088	1	0	0	0	0	1	copy fasta	MCTP2	chr15	94226561	94488952
MCTP2_chr15_94226561_94488952	0/0	t0050	5088	1	1	0	0	0	0	copy fasta	MCTP2	chr15	94226561	94488952
MCTP2_chr15_94226561_94488952	0/0	t0051	5089	1	1	0	0	0	0	copy fasta	MCTP2	chr15	94226561	94488952
MCTP2_chr15_94226561_94488952	0/0	t0052	5089	1	1	0	0	0	0	copy fasta	MCTP2	chr15	94226561	94488952
MCTP2_chr15_94226561_94488952	0/0	t0053	5088	1	1	0	0	0	0	copy fasta	MCTP2	chr15	94226561	94488952
MCTP2_chr15_94226561_94488952	0/0	t0054	5088	1	1	0	0	0	0	copy fasta	MCTP2	chr15	94226561	94488952
MCTP2_chr15_94226561_94488952	0/0	t0055	5088	1	1	0	0	0	0	copy fasta	MCTP2	chr15	94226561	94488952
MCTP2_chr15_94226561_94488952	0/0	t0056	5089	1	1	0	0	0	0	copy fasta	MCTP2	chr15	94226561	94488952
MCTP2_chr15_94226561_94488952	0/0	t0057	5088	1	1	0	0	0	0	copy fasta	MCTP2	chr15	94226561	94488952
MCTP2_chr15_94226561_94488952	0/0	t0058	5088	1	1	0	0	0	0	copy fasta	MCTP2	chr15	94226561	94488952
MCTS1_chrX_120599101_120626159	0/0	t0001	9032	57	4	12	34	4	3	copy fasta	MCTS1	chrX	120599101	120626159
MCTS1_chrX_120599101_120626159	0/0	t0002	9029	56	9	9	36	0	2	copy fasta	MCTS1	chrX	120599101	120626159
MCTS1_chrX_120599101_120626159	0/0	t0003	9031	28	0	8	11	1	8	copy fasta	MCTS1	chrX	120599101	120626159
MCTS1_chrX_120599101_120626159	0/0	t0004	9029	20	0	2	18	0	0	copy fasta	MCTS1	chrX	120599101	120626159
MCTS1_chrX_120599101_120626159	0/0	t0005	9030	11	10	1	0	0	0	copy fasta	MCTS1	chrX	120599101	120626159
MCTS1_chrX_120599101_120626159	0/0	t0006	9028	10	9	1	0	0	0	copy fasta	MCTS1	chrX	120599101	120626159
MCTS1_chrX_120599101_120626159	0/0	t0007	9029	7	5	2	0	0	0	copy fasta	MCTS1	chrX	120599101	120626159
MCTS1_chrX_120599101_120626159	0/0	t0008	9028	7	1	0	5	1	0	copy fasta	MCTS1	chrX	120599101	120626159
MCTS1_chrX_120599101_120626159	0/0	t0009	9031	6	1	0	5	0	0	copy fasta	MCTS1	chrX	120599101	120626159
MCTS1_chrX_120599101_120626159	0/0	t0010	9032	6	0	0	6	0	0	copy fasta	MCTS1	chrX	120599101	120626159
MCTS1_chrX_120599101_120626159	0/0	t0011	9030	4	0	1	3	0	0	copy fasta	MCTS1	chrX	120599101	120626159
MCTS1_chrX_120599101_120626159	0/0	t0012	9034	4	0	2	0	1	1	copy fasta	MCTS1	chrX	120599101	120626159
MCTS1_chrX_120599101_120626159	0/0	t0013	9030	3	3	0	0	0	0	copy fasta	MCTS1	chrX	120599101	120626159
MCTS1_chrX_120599101_120626159	0/0	t0014	9028	3	0	2	0	0	1	copy fasta	MCTS1	chrX	120599101	120626159
MCTS1_chrX_120599101_120626159	0/0	t0015	9028	3	3	0	0	0	0	copy fasta	MCTS1	chrX	120599101	120626159
MCTS1_chrX_120599101_120626159	0/0	t0016	9032	3	0	0	3	0	0	copy fasta	MCTS1	chrX	120599101	120626159
MCTS1_chrX_120599101_120626159	0/0	t0017	9031	3	2	1	0	0	0	copy fasta	MCTS1	chrX	120599101	120626159
MCTS1_chrX_120599101_120626159	0/0	t0018	9034	3	1	0	1	1	0	copy fasta	MCTS1	chrX	120599101	120626159
MCTS1_chrX_120599101_120626159	0/0	t0019	9032	2	0	0	1	0	1	copy fasta	MCTS1	chrX	120599101	120626159
MCTS1_chrX_120599101_120626159	0/0	t0020	9028	2	0	0	2	0	0	copy fasta	MCTS1	chrX	120599101	120626159
MCTS1_chrX_120599101_120626159	0/0	t0021	9030	2	2	0	0	0	0	copy fasta	MCTS1	chrX	120599101	120626159