JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MCTS1_chrX_120599101_120626159	0/0	t0022	9030	2	1	1	0	0	0	copy fasta	MCTS1	chrX	120599101	120626159
MCTS1_chrX_120599101_120626159	0/0	t0023	9027	2	2	0	0	0	0	copy fasta	MCTS1	chrX	120599101	120626159
MCTS1_chrX_120599101_120626159	0/0	t0024	9032	2	0	0	1	0	1	copy fasta	MCTS1	chrX	120599101	120626159
MCTS1_chrX_120599101_120626159	0/1	t0025	9032	2	0	0	0	1	0	copy fasta	MCTS1	chrX	120599101	120626159
MCTS1_chrX_120599101_120626159	0/0	t0026	9032	2	0	0	2	0	0	copy fasta	MCTS1	chrX	120599101	120626159
MCTS1_chrX_120599101_120626159	0/0	t0027	9033	2	0	0	0	0	2	copy fasta	MCTS1	chrX	120599101	120626159
MCTS1_chrX_120599101_120626159	0/0	t0028	9032	2	2	0	0	0	0	copy fasta	MCTS1	chrX	120599101	120626159
MCTS1_chrX_120599101_120626159	0/0	t0029	9032	2	0	0	2	0	0	copy fasta	MCTS1	chrX	120599101	120626159
MCTS1_chrX_120599101_120626159	0/0	t0030	9037	1	1	0	0	0	0	copy fasta	MCTS1	chrX	120599101	120626159
MCTS1_chrX_120599101_120626159	0/0	t0031	9027	1	0	0	1	0	0	copy fasta	MCTS1	chrX	120599101	120626159
MCTS1_chrX_120599101_120626159	0/0	t0032	9033	1	0	1	0	0	0	copy fasta	MCTS1	chrX	120599101	120626159
MCTS1_chrX_120599101_120626159	0/0	t0033	9030	1	0	0	1	0	0	copy fasta	MCTS1	chrX	120599101	120626159
MCTS1_chrX_120599101_120626159	0/0	t0034	9027	1	1	0	0	0	0	copy fasta	MCTS1	chrX	120599101	120626159
MCTS1_chrX_120599101_120626159	0/0	t0035	9021	1	1	0	0	0	0	copy fasta	MCTS1	chrX	120599101	120626159
MCTS1_chrX_120599101_120626159	0/0	t0036	9031	1	1	0	0	0	0	copy fasta	MCTS1	chrX	120599101	120626159
MCTS1_chrX_120599101_120626159	0/0	t0037	9029	1	1	0	0	0	0	copy fasta	MCTS1	chrX	120599101	120626159
MCTS1_chrX_120599101_120626159	0/0	t0038	9030	1	0	0	1	0	0	copy fasta	MCTS1	chrX	120599101	120626159
MCTS1_chrX_120599101_120626159	0/0	t0039	9028	1	1	0	0	0	0	copy fasta	MCTS1	chrX	120599101	120626159
MCTS1_chrX_120599101_120626159	0/0	t0040	9030	1	0	0	0	0	1	copy fasta	MCTS1	chrX	120599101	120626159
MCTS1_chrX_120599101_120626159	0/0	t0041	9030	1	0	0	1	0	0	copy fasta	MCTS1	chrX	120599101	120626159
MCTS1_chrX_120599101_120626159	0/0	t0042	9029	1	1	0	0	0	0	copy fasta	MCTS1	chrX	120599101	120626159
MCTS1_chrX_120599101_120626159	0/0	t0043	9030	1	0	0	1	0	0	copy fasta	MCTS1	chrX	120599101	120626159
MCTS1_chrX_120599101_120626159	0/0	t0044	9028	1	0	0	1	0	0	copy fasta	MCTS1	chrX	120599101	120626159
MCTS1_chrX_120599101_120626159	0/0	t0045	9030	1	0	0	1	0	0	copy fasta	MCTS1	chrX	120599101	120626159
MCTS1_chrX_120599101_120626159	0/0	t0046	9028	1	0	0	0	0	1	copy fasta	MCTS1	chrX	120599101	120626159
MCTS1_chrX_120599101_120626159	0/0	t0047	9029	1	0	0	1	0	0	copy fasta	MCTS1	chrX	120599101	120626159
MCTS1_chrX_120599101_120626159	0/0	t0048	9029	1	1	0	0	0	0	copy fasta	MCTS1	chrX	120599101	120626159
MCTS1_chrX_120599101_120626159	0/0	t0049	9031	1	0	0	1	0	0	copy fasta	MCTS1	chrX	120599101	120626159
MCTS1_chrX_120599101_120626159	0/0	t0050	9030	1	0	0	1	0	0	copy fasta	MCTS1	chrX	120599101	120626159
MCTS1_chrX_120599101_120626159	0/0	t0051	9029	1	1	0	0	0	0	copy fasta	MCTS1	chrX	120599101	120626159
MCTS1_chrX_120599101_120626159	0/0	t0052	9027	1	0	0	1	0	0	copy fasta	MCTS1	chrX	120599101	120626159
MCTS1_chrX_120599101_120626159	0/0	t0053	9029	1	1	0	0	0	0	copy fasta	MCTS1	chrX	120599101	120626159
MCTS1_chrX_120599101_120626159	0/0	t0054	9026	1	0	0	1	0	0	copy fasta	MCTS1	chrX	120599101	120626159
MCTS1_chrX_120599101_120626159	0/0	t0055	9030	1	1	0	0	0	0	copy fasta	MCTS1	chrX	120599101	120626159
MCTS1_chrX_120599101_120626159	0/0	t0056	9030	1	0	0	0	0	1	copy fasta	MCTS1	chrX	120599101	120626159
MCTS1_chrX_120599101_120626159	0/0	t0057	9022	1	1	0	0	0	0	copy fasta	MCTS1	chrX	120599101	120626159
MCTS1_chrX_120599101_120626159	0/0	t0058	9031	1	0	1	0	0	0	copy fasta	MCTS1	chrX	120599101	120626159
MCTS1_chrX_120599101_120626159	0/0	t0059	9031	1	0	0	0	0	1	copy fasta	MCTS1	chrX	120599101	120626159
MCTS1_chrX_120599101_120626159	0/0	t0060	9031	1	0	0	1	0	0	copy fasta	MCTS1	chrX	120599101	120626159
MCTS1_chrX_120599101_120626159	0/0	t0061	9032	1	0	0	0	0	1	copy fasta	MCTS1	chrX	120599101	120626159
MCTS1_chrX_120599101_120626159	0/0	t0062	9035	1	0	0	1	0	0	copy fasta	MCTS1	chrX	120599101	120626159
MCTS1_chrX_120599101_120626159	0/0	t0063	9021	1	0	0	1	0	0	copy fasta	MCTS1	chrX	120599101	120626159
MCTS1_chrX_120599101_120626159	0/0	t0064	9034	1	0	1	0	0	0	copy fasta	MCTS1	chrX	120599101	120626159
MCTS1_chrX_120599101_120626159	0/0	t0065	9031	1	0	0	1	0	0	copy fasta	MCTS1	chrX	120599101	120626159
MCTS1_chrX_120599101_120626159	0/0	t0066	9032	1	0	0	1	0	0	copy fasta	MCTS1	chrX	120599101	120626159
MCTS1_chrX_120599101_120626159	0/0	t0067	9025	1	0	1	0	0	0	copy fasta	MCTS1	chrX	120599101	120626159
MCTS1_chrX_120599101_120626159	1/0	t0068	9032	1	0	0	0	0	0	copy fasta	MCTS1	chrX	120599101	120626159
MCTS1_chrX_120599101_120626159	0/0	t0069	9032	1	0	0	1	0	0	copy fasta	MCTS1	chrX	120599101	120626159
MCTS1_chrX_120599101_120626159	0/0	t0070	9031	1	1	0	0	0	0	copy fasta	MCTS1	chrX	120599101	120626159
MCTS1_chrX_120599101_120626159	0/0	t0071	9029	1	0	0	1	0	0	copy fasta	MCTS1	chrX	120599101	120626159