JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MCTS1_chrX_120599101_120626159	0/0	t0072	9033	1	1	0	0	0	0	copy fasta	MCTS1	chrX	120599101	120626159
MCTS1_chrX_120599101_120626159	0/0	t0073	9032	1	1	0	0	0	0	copy fasta	MCTS1	chrX	120599101	120626159
MCTS1_chrX_120599101_120626159	0/0	t0074	9032	1	0	0	1	0	0	copy fasta	MCTS1	chrX	120599101	120626159
MCTS1_chrX_120599101_120626159	0/0	t0075	9033	1	0	0	1	0	0	copy fasta	MCTS1	chrX	120599101	120626159
MCTS1_chrX_120599101_120626159	0/0	t0076	9031	1	0	0	1	0	0	copy fasta	MCTS1	chrX	120599101	120626159
MCTS1_chrX_120599101_120626159	0/0	t0077	9029	1	1	0	0	0	0	copy fasta	MCTS1	chrX	120599101	120626159
MCTS1_chrX_120599101_120626159	0/0	t0078	9032	1	1	0	0	0	0	copy fasta	MCTS1	chrX	120599101	120626159
MCTS1_chrX_120599101_120626159	0/0	t0079	9032	1	0	0	1	0	0	copy fasta	MCTS1	chrX	120599101	120626159
MCTS1_chrX_120599101_120626159	0/0	t0080	9031	1	0	1	0	0	0	copy fasta	MCTS1	chrX	120599101	120626159
MCTS1_chrX_120599101_120626159	0/0	t0081	9032	1	0	1	0	0	0	copy fasta	MCTS1	chrX	120599101	120626159
MCTS1_chrX_120599101_120626159	0/0	t0082	9032	1	1	0	0	0	0	copy fasta	MCTS1	chrX	120599101	120626159
MCTS1_chrX_120599101_120626159	0/0	t0083	9031	1	0	0	1	0	0	copy fasta	MCTS1	chrX	120599101	120626159
MCTS1_chrX_120599101_120626159	0/0	t0084	9033	1	0	0	0	0	1	copy fasta	MCTS1	chrX	120599101	120626159
MCTS1_chrX_120599101_120626159	0/0	t0085	9032	1	1	0	0	0	0	copy fasta	MCTS1	chrX	120599101	120626159
MCTS1_chrX_120599101_120626159	0/0	t0086	9034	1	0	0	0	0	1	copy fasta	MCTS1	chrX	120599101	120626159
MCTS1_chrX_120599101_120626159	0/0	t0087	9047	1	1	0	0	0	0	copy fasta	MCTS1	chrX	120599101	120626159
MCTS1_chrX_120599101_120626159	0/0	t0088	9012	1	1	0	0	0	0	copy fasta	MCTS1	chrX	120599101	120626159
MCTS1_chrX_120599101_120626159	0/0	t0089	9029	1	0	0	1	0	0	copy fasta	MCTS1	chrX	120599101	120626159
MCTS2_chr20_31542379_31553081	1/1	t0001	158	347	90	74	132	13	36	copy fasta	MCTS2	chr20	31542379	31553081
MCTS2_chr20_31542379_31553081	0/0	t0002	158	3	0	2	0	1	0	copy fasta	MCTS2	chr20	31542379	31553081
MCUB_chr4_109555246_109693719	0/1	t0001	1220	169	56	29	59	4	20	copy fasta	MCUB	chr4	109555246	109693719
MCUB_chr4_109555246_109693719	1/0	t0002	1220	92	16	22	45	2	6	copy fasta	MCUB	chr4	109555246	109693719
MCUB_chr4_109555246_109693719	0/0	t0003	1220	34	3	6	19	4	2	copy fasta	MCUB	chr4	109555246	109693719
MCUB_chr4_109555246_109693719	0/0	t0004	1220	17	10	0	0	2	5	copy fasta	MCUB	chr4	109555246	109693719
MCUB_chr4_109555246_109693719	0/0	t0005	1220	14	0	0	11	0	3	copy fasta	MCUB	chr4	109555246	109693719
MCUB_chr4_109555246_109693719	0/0	t0006	1223	5	4	1	0	0	0	copy fasta	MCUB	chr4	109555246	109693719
MCUB_chr4_109555246_109693719	0/0	t0007	1220	2	0	2	0	0	0	copy fasta	MCUB	chr4	109555246	109693719
MCUB_chr4_109555246_109693719	0/0	t0008	1220	1	0	0	1	0	0	copy fasta	MCUB	chr4	109555246	109693719
MCUB_chr4_109555246_109693719	0/0	t0009	1220	1	1	0	0	0	0	copy fasta	MCUB	chr4	109555246	109693719
MCUB_chr4_109555246_109693719	0/0	t0010	1220	1	0	0	1	0	0	copy fasta	MCUB	chr4	109555246	109693719
MCUR1_chr6_13781557_13819557	0/0	t0001	4381	84	9	17	46	4	8	copy fasta	MCUR1	chr6	13781557	13819557
MCUR1_chr6_13781557_13819557	0/0	t0002	4381	67	3	12	44	1	7	copy fasta	MCUR1	chr6	13781557	13819557
MCUR1_chr6_13781557_13819557	0/0	t0003	4381	44	1	0	42	0	1	copy fasta	MCUR1	chr6	13781557	13819557
MCUR1_chr6_13781557_13819557	0/1	t0004	4381	37	2	10	18	0	6	copy fasta	MCUR1	chr6	13781557	13819557
MCUR1_chr6_13781557_13819557	0/0	t0005	4381	14	12	2	0	0	0	copy fasta	MCUR1	chr6	13781557	13819557
MCUR1_chr6_13781557_13819557	0/0	t0006	4381	11	0	8	0	3	0	copy fasta	MCUR1	chr6	13781557	13819557
MCUR1_chr6_13781557_13819557	0/0	t0007	4381	7	0	0	6	0	1	copy fasta	MCUR1	chr6	13781557	13819557
MCUR1_chr6_13781557_13819557	0/0	t0008	4382	7	7	0	0	0	0	copy fasta	MCUR1	chr6	13781557	13819557
MCUR1_chr6_13781557_13819557	0/0	t0009	4382	7	1	1	4	0	1	copy fasta	MCUR1	chr6	13781557	13819557
MCUR1_chr6_13781557_13819557	0/0	t0010	4382	6	1	0	3	1	1	copy fasta	MCUR1	chr6	13781557	13819557
MCUR1_chr6_13781557_13819557	0/0	t0011	4381	6	6	0	0	0	0	copy fasta	MCUR1	chr6	13781557	13819557
MCUR1_chr6_13781557_13819557	0/0	t0012	4381	6	6	0	0	0	0	copy fasta	MCUR1	chr6	13781557	13819557
MCUR1_chr6_13781557_13819557	0/0	t0013	4381	5	0	0	5	0	0	copy fasta	MCUR1	chr6	13781557	13819557
MCUR1_chr6_13781557_13819557	0/0	t0014	4382	5	1	0	4	0	0	copy fasta	MCUR1	chr6	13781557	13819557
MCUR1_chr6_13781557_13819557	0/0	t0015	4381	5	0	4	0	0	1	copy fasta	MCUR1	chr6	13781557	13819557
MCUR1_chr6_13781557_13819557	0/0	t0016	4381	5	4	1	0	0	0	copy fasta	MCUR1	chr6	13781557	13819557
MCUR1_chr6_13781557_13819557	0/0	t0017	4382	4	4	0	0	0	0	copy fasta	MCUR1	chr6	13781557	13819557
MCUR1_chr6_13781557_13819557	0/0	t0018	4381	3	0	0	3	0	0	copy fasta	MCUR1	chr6	13781557	13819557
MCUR1_chr6_13781557_13819557	0/0	t0019	4381	3	0	2	0	1	0	copy fasta	MCUR1	chr6	13781557	13819557
MCUR1_chr6_13781557_13819557	0/0	t0020	4381	3	0	0	3	0	0	copy fasta	MCUR1	chr6	13781557	13819557