JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MCUR1_chr6_13781557_13819557	0/0	t0071	4381	1	0	0	1	0	0	copy fasta	MCUR1	chr6	13781557	13819557
MCUR1_chr6_13781557_13819557	0/0	t0072	4381	1	0	1	0	0	0	copy fasta	MCUR1	chr6	13781557	13819557
MCUR1_chr6_13781557_13819557	0/0	t0073	4382	1	1	0	0	0	0	copy fasta	MCUR1	chr6	13781557	13819557
MCUR1_chr6_13781557_13819557	0/0	t0074	4381	1	0	1	0	0	0	copy fasta	MCUR1	chr6	13781557	13819557
MCUR1_chr6_13781557_13819557	0/0	t0075	4381	1	0	0	0	0	1	copy fasta	MCUR1	chr6	13781557	13819557
MCUR1_chr6_13781557_13819557	0/0	t0076	4381	1	0	0	1	0	0	copy fasta	MCUR1	chr6	13781557	13819557
MCUR1_chr6_13781557_13819557	0/0	t0077	4381	1	1	0	0	0	0	copy fasta	MCUR1	chr6	13781557	13819557
MCUR1_chr6_13781557_13819557	0/0	t0078	4381	1	0	1	0	0	0	copy fasta	MCUR1	chr6	13781557	13819557
MCUR1_chr6_13781557_13819557	0/0	t0079	4381	1	0	0	1	0	0	copy fasta	MCUR1	chr6	13781557	13819557
MCUR1_chr6_13781557_13819557	1/0	t0080	4381	1	0	0	0	0	0	copy fasta	MCUR1	chr6	13781557	13819557
MCUR1_chr6_13781557_13819557	0/0	t0081	4381	1	0	1	0	0	0	copy fasta	MCUR1	chr6	13781557	13819557
MCUR1_chr6_13781557_13819557	0/0	t0082	4381	1	0	1	0	0	0	copy fasta	MCUR1	chr6	13781557	13819557
MCUR1_chr6_13781557_13819557	0/0	t0083	4382	1	0	0	1	0	0	copy fasta	MCUR1	chr6	13781557	13819557
MCUR1_chr6_13781557_13819557	0/0	t0084	4381	1	0	0	0	0	1	copy fasta	MCUR1	chr6	13781557	13819557
MCUR1_chr6_13781557_13819557	0/0	t0085	4381	1	1	0	0	0	0	copy fasta	MCUR1	chr6	13781557	13819557
MCUR1_chr6_13781557_13819557	0/0	t0086	4381	1	0	1	0	0	0	copy fasta	MCUR1	chr6	13781557	13819557
MCUR1_chr6_13781557_13819557	0/0	t0087	4381	1	0	0	1	0	0	copy fasta	MCUR1	chr6	13781557	13819557
MCUR1_chr6_13781557_13819557	0/0	t0088	4381	1	1	0	0	0	0	copy fasta	MCUR1	chr6	13781557	13819557
MCUR1_chr6_13781557_13819557	0/0	t0089	4381	1	1	0	0	0	0	copy fasta	MCUR1	chr6	13781557	13819557
MCUR1_chr6_13781557_13819557	0/0	t0090	4381	1	1	0	0	0	0	copy fasta	MCUR1	chr6	13781557	13819557
MCUR1_chr6_13781557_13819557	0/0	t0091	4381	1	0	0	1	0	0	copy fasta	MCUR1	chr6	13781557	13819557
MCUR1_chr6_13781557_13819557	0/0	t0092	4381	1	0	0	1	0	0	copy fasta	MCUR1	chr6	13781557	13819557
MCU_chr10_72687143_72892694	1/1	t0001	1882	203	81	44	47	8	21	copy fasta	MCU	chr10	72687143	72892694
MCU_chr10_72687143_72892694	0/0	t0002	1887	3	3	0	0	0	0	copy fasta	MCU	chr10	72687143	72892694
MCU_chr10_72687143_72892694	0/0	t0003	1882	2	0	2	0	0	0	copy fasta	MCU	chr10	72687143	72892694
MCU_chr10_72687143_72892694	0/0	t0004	1882	1	0	0	0	0	1	copy fasta	MCU	chr10	72687143	72892694
MCU_chr10_72687143_72892694	0/0	t0005	1882	1	0	0	1	0	0	copy fasta	MCU	chr10	72687143	72892694
MDC1_chr6_30694807_30722281	0/1	t0001	699	346	69	70	151	17	38	copy fasta	MDC1	chr6	30694807	30722281
MDC1_chr6_30694807_30722281	0/0	t0002	699	24	0	0	23	0	1	copy fasta	MDC1	chr6	30694807	30722281
MDC1_chr6_30694807_30722281	0/0	t0003	695	14	12	1	0	0	1	copy fasta	MDC1	chr6	30694807	30722281
MDC1_chr6_30694807_30722281	0/0	t0004	699	7	5	1	0	0	1	copy fasta	MDC1	chr6	30694807	30722281
MDC1_chr6_30694807_30722281	0/0	t0005	699	7	4	2	1	0	0	copy fasta	MDC1	chr6	30694807	30722281
MDC1_chr6_30694807_30722281	0/0	t0006	699	5	0	4	0	1	0	copy fasta	MDC1	chr6	30694807	30722281
MDC1_chr6_30694807_30722281	0/0	t0007	699	3	0	0	1	0	2	copy fasta	MDC1	chr6	30694807	30722281
MDC1_chr6_30694807_30722281	0/0	t0008	699	3	0	0	3	0	0	copy fasta	MDC1	chr6	30694807	30722281
MDC1_chr6_30694807_30722281	0/0	t0009	699	1	0	0	1	0	0	copy fasta	MDC1	chr6	30694807	30722281
MDC1_chr6_30694807_30722281	0/0	t0010	699	1	0	0	0	0	1	copy fasta	MDC1	chr6	30694807	30722281
MDC1_chr6_30694807_30722281	0/0	t0011	699	1	0	0	1	0	0	copy fasta	MDC1	chr6	30694807	30722281
MDC1_chr6_30694807_30722281	0/0	t0012	699	1	0	0	1	0	0	copy fasta	MDC1	chr6	30694807	30722281
MDFIC2_chr3_70189479_70317638	0/0	t0001	2536	113	42	30	22	3	16	copy fasta	MDFIC2	chr3	70189479	70317638
MDFIC2_chr3_70189479_70317638	0/0	t0002	2536	84	1	12	59	2	10	copy fasta	MDFIC2	chr3	70189479	70317638
MDFIC2_chr3_70189479_70317638	1/0	t0003	2536	56	29	11	11	2	2	copy fasta	MDFIC2	chr3	70189479	70317638
MDFIC2_chr3_70189479_70317638	0/0	t0004	2536	51	6	4	30	0	11	copy fasta	MDFIC2	chr3	70189479	70317638
MDFIC2_chr3_70189479_70317638	0/0	t0005	2536	25	0	0	24	0	1	copy fasta	MDFIC2	chr3	70189479	70317638
MDFIC2_chr3_70189479_70317638	0/1	t0006	2536	11	0	7	0	1	2	copy fasta	MDFIC2	chr3	70189479	70317638
MDFIC2_chr3_70189479_70317638	0/0	t0007	2536	3	0	0	0	2	1	copy fasta	MDFIC2	chr3	70189479	70317638
MDFIC2_chr3_70189479_70317638	0/0	t0008	2536	2	2	0	0	0	0	copy fasta	MDFIC2	chr3	70189479	70317638
MDFIC2_chr3_70189479_70317638	0/0	t0009	2536	2	2	0	0	0	0	copy fasta	MDFIC2	chr3	70189479	70317638
MDFIC2_chr3_70189479_70317638	0/0	t0010	2536	2	2	0	0	0	0	copy fasta	MDFIC2	chr3	70189479	70317638
MDFIC2_chr3_70189479_70317638	0/0	t0011	2536	2	0	0	2	0	0	copy fasta	MDFIC2	chr3	70189479	70317638