Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ARGFX_chr3_121562949_121595622	0/0	t0027	4100	2	0	0	2	0	0	copy fasta	ARGFX	chr3	121562949	121595622
ARGFX_chr3_121562949_121595622	0/0	t0028	4101	2	0	0	2	0	0	copy fasta	ARGFX	chr3	121562949	121595622
ARGFX_chr3_121562949_121595622	0/0	t0029	4101	2	0	1	0	0	1	copy fasta	ARGFX	chr3	121562949	121595622
ARGFX_chr3_121562949_121595622	0/0	t0030	4099	2	0	0	1	0	1	copy fasta	ARGFX	chr3	121562949	121595622
ARGFX_chr3_121562949_121595622	0/0	t0031	4100	1	0	1	0	0	0	copy fasta	ARGFX	chr3	121562949	121595622
ARGFX_chr3_121562949_121595622	0/0	t0032	4099	1	0	0	1	0	0	copy fasta	ARGFX	chr3	121562949	121595622
ARGFX_chr3_121562949_121595622	0/0	t0033	4099	1	0	0	0	1	0	copy fasta	ARGFX	chr3	121562949	121595622
ARGFX_chr3_121562949_121595622	0/0	t0034	4100	1	0	0	1	0	0	copy fasta	ARGFX	chr3	121562949	121595622
ARGFX_chr3_121562949_121595622	0/0	t0035	4098	1	0	0	1	0	0	copy fasta	ARGFX	chr3	121562949	121595622
ARGFX_chr3_121562949_121595622	0/0	t0036	4099	1	0	1	0	0	0	copy fasta	ARGFX	chr3	121562949	121595622
ARGFX_chr3_121562949_121595622	0/0	t0037	4099	1	0	0	1	0	0	copy fasta	ARGFX	chr3	121562949	121595622
ARGFX_chr3_121562949_121595622	0/0	t0038	4099	1	0	0	1	0	0	copy fasta	ARGFX	chr3	121562949	121595622
ARGFX_chr3_121562949_121595622	0/0	t0039	4098	1	0	0	1	0	0	copy fasta	ARGFX	chr3	121562949	121595622
ARGFX_chr3_121562949_121595622	0/0	t0040	4098	1	0	1	0	0	0	copy fasta	ARGFX	chr3	121562949	121595622
ARGFX_chr3_121562949_121595622	0/0	t0041	4093	1	1	0	0	0	0	copy fasta	ARGFX	chr3	121562949	121595622
ARGFX_chr3_121562949_121595622	0/0	t0042	4092	1	1	0	0	0	0	copy fasta	ARGFX	chr3	121562949	121595622
ARGFX_chr3_121562949_121595622	0/0	t0043	4100	1	0	1	0	0	0	copy fasta	ARGFX	chr3	121562949	121595622
ARGFX_chr3_121562949_121595622	0/0	t0044	4102	1	0	0	1	0	0	copy fasta	ARGFX	chr3	121562949	121595622
ARGFX_chr3_121562949_121595622	0/0	t0045	4549	1	1	0	0	0	0	copy fasta	ARGFX	chr3	121562949	121595622
ARGFX_chr3_121562949_121595622	0/0	t0046	4102	1	0	0	0	0	1	copy fasta	ARGFX	chr3	121562949	121595622
ARGFX_chr3_121562949_121595622	0/0	t0047	4100	1	0	0	1	0	0	copy fasta	ARGFX	chr3	121562949	121595622
ARGFX_chr3_121562949_121595622	0/0	t0048	4548	1	1	0	0	0	0	copy fasta	ARGFX	chr3	121562949	121595622
ARGFX_chr3_121562949_121595622	0/0	t0049	4100	1	1	0	0	0	0	copy fasta	ARGFX	chr3	121562949	121595622
ARGFX_chr3_121562949_121595622	0/0	t0050	4100	1	0	0	0	0	1	copy fasta	ARGFX	chr3	121562949	121595622
ARGFX_chr3_121562949_121595622	0/0	t0051	4100	1	1	0	0	0	0	copy fasta	ARGFX	chr3	121562949	121595622
ARGFX_chr3_121562949_121595622	0/0	t0052	4101	1	0	1	0	0	0	copy fasta	ARGFX	chr3	121562949	121595622
ARGFX_chr3_121562949_121595622	0/0	t0053	4100	1	0	0	1	0	0	copy fasta	ARGFX	chr3	121562949	121595622
ARGFX_chr3_121562949_121595622	0/0	t0054	4101	1	0	1	0	0	0	copy fasta	ARGFX	chr3	121562949	121595622
ARGFX_chr3_121562949_121595622	0/0	t0055	4098	1	0	0	1	0	0	copy fasta	ARGFX	chr3	121562949	121595622
ARGLU1_chr13_106536673_106573137	0/1	t0001	2541	159	32	33	55	12	26	copy fasta	ARGLU1	chr13	106536673	106573137
ARGLU1_chr13_106536673_106573137	1/0	t0002	2542	153	34	28	75	2	13	copy fasta	ARGLU1	chr13	106536673	106573137
ARGLU1_chr13_106536673_106573137	0/0	t0003	2543	14	1	8	5	0	0	copy fasta	ARGLU1	chr13	106536673	106573137
ARGLU1_chr13_106536673_106573137	0/0	t0004	2542	14	0	0	14	0	0	copy fasta	ARGLU1	chr13	106536673	106573137
ARGLU1_chr13_106536673_106573137	0/0	t0005	2542	6	6	0	0	0	0	copy fasta	ARGLU1	chr13	106536673	106573137
ARGLU1_chr13_106536673_106573137	0/0	t0006	2542	5	5	0	0	0	0	copy fasta	ARGLU1	chr13	106536673	106573137
ARGLU1_chr13_106536673_106573137	0/0	t0007	2543	5	1	0	4	0	0	copy fasta	ARGLU1	chr13	106536673	106573137
ARGLU1_chr13_106536673_106573137	0/0	t0008	2544	4	3	1	0	0	0	copy fasta	ARGLU1	chr13	106536673	106573137
ARGLU1_chr13_106536673_106573137	0/0	t0009	2542	2	0	0	0	0	2	copy fasta	ARGLU1	chr13	106536673	106573137
ARGLU1_chr13_106536673_106573137	0/0	t0010	2542	2	0	0	2	0	0	copy fasta	ARGLU1	chr13	106536673	106573137
ARGLU1_chr13_106536673_106573137	0/0	t0011	2542	1	1	0	0	0	0	copy fasta	ARGLU1	chr13	106536673	106573137
ARGLU1_chr13_106536673_106573137	0/0	t0012	2541	1	1	0	0	0	0	copy fasta	ARGLU1	chr13	106536673	106573137
ARGLU1_chr13_106536673_106573137	0/0	t0013	2541	1	1	0	0	0	0	copy fasta	ARGLU1	chr13	106536673	106573137
ARGLU1_chr13_106536673_106573137	0/0	t0014	2541	1	0	0	0	0	1	copy fasta	ARGLU1	chr13	106536673	106573137
ARGLU1_chr13_106536673_106573137	0/0	t0015	2543	1	1	0	0	0	0	copy fasta	ARGLU1	chr13	106536673	106573137
ARGLU1_chr13_106536673_106573137	0/0	t0016	2542	1	1	0	0	0	0	copy fasta	ARGLU1	chr13	106536673	106573137
ARGLU1_chr13_106536673_106573137	0/0	t0017	2542	1	0	0	1	0	0	copy fasta	ARGLU1	chr13	106536673	106573137
ARGLU1_chr13_106536673_106573137	0/0	t0018	2542	1	1	0	0	0	0	copy fasta	ARGLU1	chr13	106536673	106573137
ARGLU1_chr13_106536673_106573137	0/0	t0019	2543	1	1	0	0	0	0	copy fasta	ARGLU1	chr13	106536673	106573137
ARGLU1_chr13_106536673_106573137	0/0	t0020	2542	1	0	0	1	0	0	copy fasta	ARGLU1	chr13	106536673	106573137
ARGLU1_chr13_106536673_106573137	0/0	t0021	2542	1	1	0	0	0	0	copy fasta	ARGLU1	chr13	106536673	106573137