JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MDFI_chr6_41633468_41659244	0/0	t0019	866	1	0	0	0	0	1	copy fasta	MDFI	chr6	41633468	41659244
MDFI_chr6_41633468_41659244	0/0	t0020	866	1	1	0	0	0	0	copy fasta	MDFI	chr6	41633468	41659244
MDGA1_chr6_37625679_37702883	0/0	t0001	7762	55	1	3	48	0	3	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	t0002	7762	48	3	11	19	3	12	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	t0003	7762	43	0	13	25	3	2	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	t0004	7768	31	3	3	22	0	3	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	t0005	7768	7	0	6	0	0	1	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	1/0	t0006	7762	7	0	2	0	1	3	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	t0007	7744	6	0	0	6	0	0	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	t0008	7762	6	6	0	0	0	0	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/1	t0009	7762	6	2	3	0	0	0	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	t0010	7768	6	6	0	0	0	0	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	t0011	7768	5	1	3	1	0	0	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	t0012	7762	5	4	1	0	0	0	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	t0013	7762	5	1	0	1	1	2	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	t0014	7762	5	5	0	0	0	0	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	t0015	7763	5	0	5	0	0	0	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	t0016	7762	5	5	0	0	0	0	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	t0017	7764	5	0	3	0	2	0	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	t0018	7762	4	0	1	2	0	1	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	t0019	7762	4	0	0	4	0	0	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	t0020	7762	4	0	0	4	0	0	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	t0021	7768	4	0	2	2	0	0	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	t0022	7745	3	3	0	0	0	0	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	t0023	7762	3	0	0	3	0	0	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	t0024	7761	3	0	3	0	0	0	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	t0025	7769	3	2	1	0	0	0	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	t0026	7762	3	0	2	0	1	0	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	t0027	7762	3	0	0	1	1	1	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	t0028	7762	3	3	0	0	0	0	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	t0029	7763	3	0	2	1	0	0	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	t0030	7738	2	0	0	1	0	1	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	t0031	7744	2	0	0	2	0	0	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	t0032	7738	2	2	0	0	0	0	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	t0033	7768	2	0	0	0	1	1	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	t0034	7762	2	0	0	0	2	0	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	t0035	7768	2	0	0	0	0	2	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	t0036	7768	2	2	0	0	0	0	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	t0037	7762	2	1	1	0	0	0	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	t0038	7762	2	0	1	0	0	1	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	t0039	7762	2	0	2	0	0	0	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	t0040	7762	2	2	0	0	0	0	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	t0041	7762	2	0	0	0	0	2	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	t0042	7762	2	2	0	0	0	0	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	t0043	7768	2	2	0	0	0	0	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	t0044	7764	1	1	0	0	0	0	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	t0045	7762	1	1	0	0	0	0	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	t0046	7738	1	0	0	0	0	1	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	t0047	7738	1	1	0	0	0	0	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	t0048	7738	1	1	0	0	0	0	copy fasta	MDGA1	chr6	37625679	37702883