JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MDGA1_chr6_37625679_37702883	0/0	t0099	7762	1	0	0	1	0	0	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	t0100	7762	1	0	0	0	1	0	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	t0101	7762	1	0	0	1	0	0	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	t0102	7762	1	0	0	0	1	0	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	t0103	7762	1	1	0	0	0	0	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	t0104	7762	1	1	0	0	0	0	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	t0105	7762	1	0	0	0	0	1	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	t0106	7762	1	0	0	1	0	0	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	t0107	7762	1	0	0	0	0	1	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	t0108	7762	1	1	0	0	0	0	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	t0109	7763	1	0	0	1	0	0	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	t0110	7763	1	0	0	1	0	0	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	t0111	7763	1	0	0	1	0	0	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	t0112	7763	1	1	0	0	0	0	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	t0113	7764	1	1	0	0	0	0	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	t0114	7763	1	1	0	0	0	0	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	t0115	7764	1	0	0	1	0	0	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	t0116	7762	1	0	0	1	0	0	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	t0117	7768	1	1	0	0	0	0	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	t0118	7762	1	1	0	0	0	0	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	t0119	7768	1	1	0	0	0	0	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	t0120	7763	1	1	0	0	0	0	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	t0121	7762	1	1	0	0	0	0	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	t0122	7762	1	1	0	0	0	0	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	t0123	7762	1	1	0	0	0	0	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	t0124	7762	1	1	0	0	0	0	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	t0125	7762	1	1	0	0	0	0	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	t0126	7768	1	1	0	0	0	0	copy fasta	MDGA1	chr6	37625679	37702883
MDGA1_chr6_37625679_37702883	0/0	t0127	7762	1	0	1	0	0	0	copy fasta	MDGA1	chr6	37625679	37702883
MDGA2_chr14_46835092_47680605	0/0	t0001	2634	29	11	7	3	1	7	copy fasta	MDGA2	chr14	46835092	47680605
MDGA2_chr14_46835092_47680605	0/0	t0002	2635	18	5	7	0	2	4	copy fasta	MDGA2	chr14	46835092	47680605
MDGA2_chr14_46835092_47680605	0/0	t0003	2635	13	1	5	2	2	3	copy fasta	MDGA2	chr14	46835092	47680605
MDGA2_chr14_46835092_47680605	0/0	t0004	2634	8	7	1	0	0	0	copy fasta	MDGA2	chr14	46835092	47680605
MDGA2_chr14_46835092_47680605	0/0	t0005	2634	6	5	1	0	0	0	copy fasta	MDGA2	chr14	46835092	47680605
MDGA2_chr14_46835092_47680605	0/0	t0006	2636	6	1	3	0	0	2	copy fasta	MDGA2	chr14	46835092	47680605
MDGA2_chr14_46835092_47680605	0/0	t0007	2635	5	2	2	1	0	0	copy fasta	MDGA2	chr14	46835092	47680605
MDGA2_chr14_46835092_47680605	0/0	t0008	2634	4	0	0	2	0	2	copy fasta	MDGA2	chr14	46835092	47680605
MDGA2_chr14_46835092_47680605	0/0	t0009	2634	4	4	0	0	0	0	copy fasta	MDGA2	chr14	46835092	47680605
MDGA2_chr14_46835092_47680605	0/0	t0010	2650	3	3	0	0	0	0	copy fasta	MDGA2	chr14	46835092	47680605
MDGA2_chr14_46835092_47680605	0/0	t0011	2634	2	2	0	0	0	0	copy fasta	MDGA2	chr14	46835092	47680605
MDGA2_chr14_46835092_47680605	0/0	t0012	2635	2	2	0	0	0	0	copy fasta	MDGA2	chr14	46835092	47680605
MDGA2_chr14_46835092_47680605	0/0	t0013	2635	2	1	1	0	0	0	copy fasta	MDGA2	chr14	46835092	47680605
MDGA2_chr14_46835092_47680605	0/0	t0014	2634	2	0	2	0	0	0	copy fasta	MDGA2	chr14	46835092	47680605
MDGA2_chr14_46835092_47680605	0/0	t0015	2636	2	1	1	0	0	0	copy fasta	MDGA2	chr14	46835092	47680605
MDGA2_chr14_46835092_47680605	0/0	t0016	2635	1	0	1	0	0	0	copy fasta	MDGA2	chr14	46835092	47680605
MDGA2_chr14_46835092_47680605	0/0	t0017	2635	1	1	0	0	0	0	copy fasta	MDGA2	chr14	46835092	47680605
MDGA2_chr14_46835092_47680605	0/0	t0018	2634	1	0	0	0	0	1	copy fasta	MDGA2	chr14	46835092	47680605
MDGA2_chr14_46835092_47680605	0/0	t0019	2649	1	1	0	0	0	0	copy fasta	MDGA2	chr14	46835092	47680605
MDGA2_chr14_46835092_47680605	0/0	t0020	2634	1	0	0	0	1	0	copy fasta	MDGA2	chr14	46835092	47680605
MDGA2_chr14_46835092_47680605	0/0	t0021	2635	1	0	1	0	0	0	copy fasta	MDGA2	chr14	46835092	47680605