JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MDGA2_chr14_46835092_47680605	0/0	t0022	2635	1	0	1	0	0	0	copy fasta	MDGA2	chr14	46835092	47680605
MDGA2_chr14_46835092_47680605	0/0	t0023	2634	1	1	0	0	0	0	copy fasta	MDGA2	chr14	46835092	47680605
MDGA2_chr14_46835092_47680605	0/0	t0024	2635	1	1	0	0	0	0	copy fasta	MDGA2	chr14	46835092	47680605
MDGA2_chr14_46835092_47680605	0/0	t0025	2635	1	1	0	0	0	0	copy fasta	MDGA2	chr14	46835092	47680605
MDGA2_chr14_46835092_47680605	0/0	t0026	2634	1	0	0	0	0	1	copy fasta	MDGA2	chr14	46835092	47680605
MDGA2_chr14_46835092_47680605	0/0	t0027	2636	1	1	0	0	0	0	copy fasta	MDGA2	chr14	46835092	47680605
MDGA2_chr14_46835092_47680605	0/0	t0028	2634	1	0	1	0	0	0	copy fasta	MDGA2	chr14	46835092	47680605
MDGA2_chr14_46835092_47680605	0/0	t0029	2635	1	1	0	0	0	0	copy fasta	MDGA2	chr14	46835092	47680605
MDH1B_chr2_206732763_206770328	1/1	t0001	778	258	84	48	84	10	30	copy fasta	MDH1B	chr2	206732763	206770328
MDH1B_chr2_206732763_206770328	0/0	t0002	778	107	10	14	69	2	12	copy fasta	MDH1B	chr2	206732763	206770328
MDH1B_chr2_206732763_206770328	0/0	t0003	774	4	0	0	4	0	0	copy fasta	MDH1B	chr2	206732763	206770328
MDH1B_chr2_206732763_206770328	0/0	t0004	778	1	0	0	1	0	0	copy fasta	MDH1B	chr2	206732763	206770328
MDH1_chr2_63583963_63612197	1/1	t0001	292	352	95	64	129	16	46	copy fasta	MDH1	chr2	63583963	63612197
MDH1_chr2_63583963_63612197	0/0	t0002	292	1	0	0	1	0	0	copy fasta	MDH1	chr2	63583963	63612197
MDH1_chr2_63583963_63612197	0/0	t0003	292	1	1	0	0	0	0	copy fasta	MDH1	chr2	63583963	63612197
MDH2_chr7_76043106_76072508	0/0	t0001	1154	154	23	18	84	5	24	copy fasta	MDH2	chr7	76043106	76072508
MDH2_chr7_76043106_76072508	0/1	t0002	1154	149	13	43	60	12	20	copy fasta	MDH2	chr7	76043106	76072508
MDH2_chr7_76043106_76072508	0/0	t0003	1154	73	30	8	32	1	2	copy fasta	MDH2	chr7	76043106	76072508
MDH2_chr7_76043106_76072508	0/0	t0004	1154	6	6	0	0	0	0	copy fasta	MDH2	chr7	76043106	76072508
MDH2_chr7_76043106_76072508	0/0	t0005	1154	5	5	0	0	0	0	copy fasta	MDH2	chr7	76043106	76072508
MDH2_chr7_76043106_76072508	0/0	t0006	1154	3	3	0	0	0	0	copy fasta	MDH2	chr7	76043106	76072508
MDH2_chr7_76043106_76072508	0/0	t0007	1154	2	2	0	0	0	0	copy fasta	MDH2	chr7	76043106	76072508
MDH2_chr7_76043106_76072508	0/0	t0008	1154	2	2	0	0	0	0	copy fasta	MDH2	chr7	76043106	76072508
MDH2_chr7_76043106_76072508	0/0	t0009	1154	2	2	0	0	0	0	copy fasta	MDH2	chr7	76043106	76072508
MDH2_chr7_76043106_76072508	1/0	t0010	1154	1	0	0	0	0	0	copy fasta	MDH2	chr7	76043106	76072508
MDH2_chr7_76043106_76072508	0/0	t0011	1154	1	0	1	0	0	0	copy fasta	MDH2	chr7	76043106	76072508
MDK_chr11_46376669_46388801	1/1	t0001	398	298	95	56	101	8	36	copy fasta	MDK	chr11	46376669	46388801
MDK_chr11_46376669_46388801	0/0	t0002	398	8	0	0	8	0	0	copy fasta	MDK	chr11	46376669	46388801
MDK_chr11_46376669_46388801	0/0	t0003	398	1	0	0	1	0	0	copy fasta	MDK	chr11	46376669	46388801
MDK_chr11_46376669_46388801	0/0	t0004	398	1	1	0	0	0	0	copy fasta	MDK	chr11	46376669	46388801
MDK_chr11_46376669_46388801	0/0	t0005	398	1	1	0	0	0	0	copy fasta	MDK	chr11	46376669	46388801
MDK_chr11_46376669_46388801	0/0	t0006	398	1	1	0	0	0	0	copy fasta	MDK	chr11	46376669	46388801
MDM1_chr12_68289566_68337362	0/0	t0001	806	257	64	54	106	9	24	copy fasta	MDM1	chr12	68289566	68337362
MDM1_chr12_68289566_68337362	1/1	t0002	806	129	19	18	72	5	13	copy fasta	MDM1	chr12	68289566	68337362
MDM1_chr12_68289566_68337362	0/0	t0003	806	6	5	1	0	0	0	copy fasta	MDM1	chr12	68289566	68337362
MDM1_chr12_68289566_68337362	0/0	t0004	805	3	3	0	0	0	0	copy fasta	MDM1	chr12	68289566	68337362
MDM1_chr12_68289566_68337362	0/0	t0005	806	1	1	0	0	0	0	copy fasta	MDM1	chr12	68289566	68337362
MDM1_chr12_68289566_68337362	0/0	t0006	806	1	1	0	0	0	0	copy fasta	MDM1	chr12	68289566	68337362
MDM1_chr12_68289566_68337362	0/0	t0007	806	1	1	0	0	0	0	copy fasta	MDM1	chr12	68289566	68337362
MDM1_chr12_68289566_68337362	0/0	t0008	806	1	0	0	1	0	0	copy fasta	MDM1	chr12	68289566	68337362
MDM1_chr12_68289566_68337362	0/0	t0009	806	1	0	0	0	0	1	copy fasta	MDM1	chr12	68289566	68337362
MDM1_chr12_68289566_68337362	0/0	t0010	806	1	0	0	1	0	0	copy fasta	MDM1	chr12	68289566	68337362
MDM1_chr12_68289566_68337362	0/0	t0011	806	1	0	1	0	0	0	copy fasta	MDM1	chr12	68289566	68337362
MDM2_chr12_68803177_68850544	0/0	t0001	5986	84	6	17	47	4	10	copy fasta	MDM2	chr12	68803177	68850544
MDM2_chr12_68803177_68850544	0/1	t0002	5996	64	6	11	41	2	3	copy fasta	MDM2	chr12	68803177	68850544
MDM2_chr12_68803177_68850544	0/0	t0003	5997	30	1	8	17	1	3	copy fasta	MDM2	chr12	68803177	68850544
MDM2_chr12_68803177_68850544	0/0	t0004	5986	22	0	4	17	0	1	copy fasta	MDM2	chr12	68803177	68850544
MDM2_chr12_68803177_68850544	0/0	t0005	5997	17	0	9	4	0	4	copy fasta	MDM2	chr12	68803177	68850544
MDM2_chr12_68803177_68850544	0/0	t0006	5994	11	8	3	0	0	0	copy fasta	MDM2	chr12	68803177	68850544
MDM2_chr12_68803177_68850544	0/0	t0007	5998	11	0	1	8	0	2	copy fasta	MDM2	chr12	68803177	68850544