JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MDM2_chr12_68803177_68850544	0/0	t0008	5995	10	4	4	0	0	2	copy fasta	MDM2	chr12	68803177	68850544
MDM2_chr12_68803177_68850544	0/0	t0009	5993	9	8	1	0	0	0	copy fasta	MDM2	chr12	68803177	68850544
MDM2_chr12_68803177_68850544	0/0	t0010	5993	9	1	0	8	0	0	copy fasta	MDM2	chr12	68803177	68850544
MDM2_chr12_68803177_68850544	0/0	t0011	5995	8	0	0	6	1	1	copy fasta	MDM2	chr12	68803177	68850544
MDM2_chr12_68803177_68850544	0/0	t0012	5970	6	5	1	0	0	0	copy fasta	MDM2	chr12	68803177	68850544
MDM2_chr12_68803177_68850544	0/0	t0013	5995	4	0	0	4	0	0	copy fasta	MDM2	chr12	68803177	68850544
MDM2_chr12_68803177_68850544	0/0	t0014	6000	4	4	0	0	0	0	copy fasta	MDM2	chr12	68803177	68850544
MDM2_chr12_68803177_68850544	0/0	t0015	5970	4	4	0	0	0	0	copy fasta	MDM2	chr12	68803177	68850544
MDM2_chr12_68803177_68850544	0/0	t0016	5989	4	0	2	1	0	1	copy fasta	MDM2	chr12	68803177	68850544
MDM2_chr12_68803177_68850544	1/0	t0017	5997	3	0	0	0	2	0	copy fasta	MDM2	chr12	68803177	68850544
MDM2_chr12_68803177_68850544	0/0	t0018	5996	3	0	3	0	0	0	copy fasta	MDM2	chr12	68803177	68850544
MDM2_chr12_68803177_68850544	0/0	t0019	5999	3	3	0	0	0	0	copy fasta	MDM2	chr12	68803177	68850544
MDM2_chr12_68803177_68850544	0/0	t0020	5989	3	0	0	0	3	0	copy fasta	MDM2	chr12	68803177	68850544
MDM2_chr12_68803177_68850544	0/0	t0021	5971	3	3	0	0	0	0	copy fasta	MDM2	chr12	68803177	68850544
MDM2_chr12_68803177_68850544	0/0	t0022	5987	3	0	1	2	0	0	copy fasta	MDM2	chr12	68803177	68850544
MDM2_chr12_68803177_68850544	0/0	t0023	5997	2	2	0	0	0	0	copy fasta	MDM2	chr12	68803177	68850544
MDM2_chr12_68803177_68850544	0/0	t0024	5986	2	0	2	0	0	0	copy fasta	MDM2	chr12	68803177	68850544
MDM2_chr12_68803177_68850544	0/0	t0025	5992	2	1	1	0	0	0	copy fasta	MDM2	chr12	68803177	68850544
MDM2_chr12_68803177_68850544	0/0	t0026	5992	2	2	0	0	0	0	copy fasta	MDM2	chr12	68803177	68850544
MDM2_chr12_68803177_68850544	0/0	t0027	5993	2	1	1	0	0	0	copy fasta	MDM2	chr12	68803177	68850544
MDM2_chr12_68803177_68850544	0/0	t0028	5994	2	2	0	0	0	0	copy fasta	MDM2	chr12	68803177	68850544
MDM2_chr12_68803177_68850544	0/0	t0029	5988	2	2	0	0	0	0	copy fasta	MDM2	chr12	68803177	68850544
MDM2_chr12_68803177_68850544	0/0	t0030	5996	2	0	1	1	0	0	copy fasta	MDM2	chr12	68803177	68850544
MDM2_chr12_68803177_68850544	0/0	t0031	5996	2	0	2	0	0	0	copy fasta	MDM2	chr12	68803177	68850544
MDM2_chr12_68803177_68850544	0/0	t0032	5994	2	2	0	0	0	0	copy fasta	MDM2	chr12	68803177	68850544
MDM2_chr12_68803177_68850544	0/0	t0033	5997	2	0	2	0	0	0	copy fasta	MDM2	chr12	68803177	68850544
MDM2_chr12_68803177_68850544	0/0	t0034	5997	2	2	0	0	0	0	copy fasta	MDM2	chr12	68803177	68850544
MDM2_chr12_68803177_68850544	0/0	t0035	5997	2	0	0	0	0	2	copy fasta	MDM2	chr12	68803177	68850544
MDM2_chr12_68803177_68850544	0/0	t0036	5991	2	2	0	0	0	0	copy fasta	MDM2	chr12	68803177	68850544
MDM2_chr12_68803177_68850544	0/0	t0037	5982	2	0	0	2	0	0	copy fasta	MDM2	chr12	68803177	68850544
MDM2_chr12_68803177_68850544	0/0	t0038	5996	2	0	0	2	0	0	copy fasta	MDM2	chr12	68803177	68850544
MDM2_chr12_68803177_68850544	0/0	t0039	5986	1	0	0	0	1	0	copy fasta	MDM2	chr12	68803177	68850544
MDM2_chr12_68803177_68850544	0/0	t0040	5995	1	1	0	0	0	0	copy fasta	MDM2	chr12	68803177	68850544
MDM2_chr12_68803177_68850544	0/0	t0041	5998	1	1	0	0	0	0	copy fasta	MDM2	chr12	68803177	68850544
MDM2_chr12_68803177_68850544	0/0	t0042	5985	1	0	0	1	0	0	copy fasta	MDM2	chr12	68803177	68850544
MDM2_chr12_68803177_68850544	0/0	t0043	5985	1	0	0	1	0	0	copy fasta	MDM2	chr12	68803177	68850544
MDM2_chr12_68803177_68850544	0/0	t0044	5992	1	1	0	0	0	0	copy fasta	MDM2	chr12	68803177	68850544
MDM2_chr12_68803177_68850544	0/0	t0045	5995	1	0	0	1	0	0	copy fasta	MDM2	chr12	68803177	68850544
MDM2_chr12_68803177_68850544	0/0	t0046	5997	1	0	1	0	0	0	copy fasta	MDM2	chr12	68803177	68850544
MDM2_chr12_68803177_68850544	0/0	t0047	5996	1	0	0	0	1	0	copy fasta	MDM2	chr12	68803177	68850544
MDM2_chr12_68803177_68850544	0/0	t0048	5996	1	0	0	1	0	0	copy fasta	MDM2	chr12	68803177	68850544
MDM2_chr12_68803177_68850544	0/0	t0049	5996	1	0	0	0	0	1	copy fasta	MDM2	chr12	68803177	68850544
MDM2_chr12_68803177_68850544	0/0	t0050	5998	1	0	0	1	0	0	copy fasta	MDM2	chr12	68803177	68850544
MDM2_chr12_68803177_68850544	0/0	t0051	5995	1	0	0	1	0	0	copy fasta	MDM2	chr12	68803177	68850544
MDM2_chr12_68803177_68850544	0/0	t0052	5997	1	0	0	0	0	1	copy fasta	MDM2	chr12	68803177	68850544
MDM2_chr12_68803177_68850544	0/0	t0053	5997	1	0	0	1	0	0	copy fasta	MDM2	chr12	68803177	68850544
MDM2_chr12_68803177_68850544	0/0	t0054	5997	1	0	0	0	0	1	copy fasta	MDM2	chr12	68803177	68850544
MDM2_chr12_68803177_68850544	0/0	t0055	6000	1	1	0	0	0	0	copy fasta	MDM2	chr12	68803177	68850544
MDM2_chr12_68803177_68850544	0/0	t0056	5996	1	1	0	0	0	0	copy fasta	MDM2	chr12	68803177	68850544
MDM2_chr12_68803177_68850544	0/0	t0057	5995	1	1	0	0	0	0	copy fasta	MDM2	chr12	68803177	68850544