JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ME2_chr18_50874118_50959257	0/0	t0009	7278	5	0	0	5	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0010	7277	5	2	0	1	1	1	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0011	7273	5	0	0	4	0	1	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0012	7258	5	4	1	0	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0013	7267	5	0	1	4	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0014	7278	4	0	4	0	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0015	7277	4	0	3	0	1	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0016	7279	4	1	0	3	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0017	7272	4	0	1	1	0	2	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0018	7275	4	0	2	1	0	1	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0019	7278	3	0	0	3	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0020	7270	3	0	2	0	0	1	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0021	7278	3	2	1	0	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0022	7276	3	1	0	0	0	2	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0023	7274	3	3	0	0	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0024	7275	3	0	0	3	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0025	7289	2	2	0	0	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0026	7290	2	2	0	0	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0027	7263	2	0	0	2	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0028	7276	2	2	0	0	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0029	7263	2	0	0	2	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0030	7278	2	1	1	0	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0031	7279	2	0	1	1	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0032	7276	2	2	0	0	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0033	7272	2	0	0	2	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0034	7275	2	1	0	1	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0035	7272	2	1	1	0	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0036	7280	2	2	0	0	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0037	7274	2	0	2	0	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0038	7259	2	2	0	0	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0039	7268	2	0	0	2	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0040	7275	2	0	0	1	1	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0041	7275	2	2	0	0	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0042	7273	2	2	0	0	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0043	7272	2	0	0	2	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0044	7290	1	1	0	0	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0045	7294	1	1	0	0	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0046	7276	1	1	0	0	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0047	7277	1	1	0	0	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0048	7276	1	1	0	0	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0049	7277	1	0	0	0	0	1	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0050	7274	1	0	0	0	0	1	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0051	7297	1	1	0	0	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0052	7297	1	1	0	0	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0053	7277	1	0	1	0	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0054	7276	1	0	0	1	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0055	7275	1	0	0	1	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0056	7276	1	0	0	1	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0057	7278	1	1	0	0	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0058	7278	1	0	1	0	0	0	copy fasta	ME2	chr18	50874118	50959257