JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ME2_chr18_50874118_50959257	0/0	t0109	7279	1	0	1	0	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0110	7287	1	1	0	0	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0111	7287	1	1	0	0	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0112	7288	1	1	0	0	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0113	7273	1	0	0	1	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0114	7278	1	0	0	0	0	1	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0115	7271	1	0	1	0	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0116	7274	1	0	0	1	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0117	7273	1	0	0	1	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0118	7275	1	0	0	1	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0119	7276	1	0	0	1	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0120	7275	1	1	0	0	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0121	7279	1	0	0	1	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0122	7272	1	1	0	0	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0123	7296	1	0	1	0	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0124	7273	1	0	0	0	1	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0125	7274	1	1	0	0	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0126	7273	1	0	0	1	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0127	7273	1	0	0	1	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0128	7274	1	0	0	1	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0129	7273	1	0	1	0	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0130	7273	1	0	0	0	0	1	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0131	7284	1	1	0	0	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0132	7283	1	1	0	0	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0133	7282	1	1	0	0	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0134	7281	1	1	0	0	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0135	7272	1	0	0	1	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0136	7274	1	0	0	0	1	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0137	7284	1	1	0	0	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0138	7275	1	1	0	0	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0139	7276	1	0	0	1	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0140	7269	1	0	0	1	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0141	7266	1	0	0	1	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0142	7264	1	0	0	1	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0143	7263	1	0	1	0	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0144	7270	1	0	0	1	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0145	7273	1	0	0	1	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0146	7306	1	0	0	0	1	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0147	7273	1	0	0	1	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0148	7276	1	0	0	1	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0149	7275	1	1	0	0	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0150	7276	1	1	0	0	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0151	7274	1	0	0	1	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0152	7284	1	1	0	0	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0153	7276	1	0	0	0	0	1	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0154	7276	1	0	0	1	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0155	7290	1	1	0	0	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0156	7277	1	0	0	1	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0157	7271	1	1	0	0	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0158	7276	1	0	1	0	0	0	copy fasta	ME2	chr18	50874118	50959257