JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ME2_chr18_50874118_50959257	0/1	t0159	7274	1	0	0	0	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0160	7275	1	1	0	0	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0161	7259	1	0	1	0	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0162	7274	1	0	1	0	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0163	7275	1	1	0	0	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0164	7275	1	1	0	0	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0165	7277	1	0	0	1	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0166	7276	1	0	0	0	0	1	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0167	7277	1	0	0	0	0	1	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0168	7281	1	0	0	1	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0169	7275	1	1	0	0	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0170	7273	1	1	0	0	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0171	7276	1	0	0	1	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0172	7262	1	0	0	1	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0173	7272	1	1	0	0	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0174	7271	1	1	0	0	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0175	7271	1	0	1	0	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0176	7270	1	0	0	0	1	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0177	7273	1	0	0	1	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	1/0	t0178	7277	1	0	0	0	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0179	7274	1	0	0	1	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0180	7273	1	0	0	1	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0181	7275	1	1	0	0	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0182	7275	1	1	0	0	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0183	7275	1	1	0	0	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0184	7265	1	0	0	1	0	0	copy fasta	ME2	chr18	50874118	50959257
ME3_chr11_86436108_86677616	1/0	t0001	479	200	49	43	67	7	33	copy fasta	ME3	chr11	86436108	86677616
ME3_chr11_86436108_86677616	0/1	t0002	477	102	20	19	55	3	4	copy fasta	ME3	chr11	86436108	86677616
ME3_chr11_86436108_86677616	0/0	t0003	479	10	5	2	0	0	3	copy fasta	ME3	chr11	86436108	86677616
ME3_chr11_86436108_86677616	0/0	t0004	477	6	6	0	0	0	0	copy fasta	ME3	chr11	86436108	86677616
ME3_chr11_86436108_86677616	0/0	t0005	479	1	0	0	0	0	1	copy fasta	ME3	chr11	86436108	86677616
ME3_chr11_86436108_86677616	0/0	t0006	479	1	0	0	0	0	1	copy fasta	ME3	chr11	86436108	86677616
MEA1_chr6_43006143_43018946	1/1	t0001	1461	297	78	62	123	6	26	copy fasta	MEA1	chr6	43006143	43018946
MEA1_chr6_43006143_43018946	0/0	t0002	1461	9	7	2	0	0	0	copy fasta	MEA1	chr6	43006143	43018946
MEA1_chr6_43006143_43018946	0/0	t0003	1449	7	0	5	0	0	2	copy fasta	MEA1	chr6	43006143	43018946
MEA1_chr6_43006143_43018946	0/0	t0004	1461	5	1	4	0	0	0	copy fasta	MEA1	chr6	43006143	43018946
MEA1_chr6_43006143_43018946	0/0	t0005	1461	3	3	0	0	0	0	copy fasta	MEA1	chr6	43006143	43018946
MEA1_chr6_43006143_43018946	0/0	t0006	1461	3	0	0	3	0	0	copy fasta	MEA1	chr6	43006143	43018946
MEA1_chr6_43006143_43018946	0/0	t0007	1461	2	2	0	0	0	0	copy fasta	MEA1	chr6	43006143	43018946
MEA1_chr6_43006143_43018946	0/0	t0008	1461	2	2	0	0	0	0	copy fasta	MEA1	chr6	43006143	43018946
MEA1_chr6_43006143_43018946	0/0	t0009	1461	1	0	0	1	0	0	copy fasta	MEA1	chr6	43006143	43018946
MEA1_chr6_43006143_43018946	0/0	t0010	1461	1	0	0	1	0	0	copy fasta	MEA1	chr6	43006143	43018946
MEA1_chr6_43006143_43018946	0/0	t0011	1461	1	1	0	0	0	0	copy fasta	MEA1	chr6	43006143	43018946
MEA1_chr6_43006143_43018946	0/0	t0012	1461	1	0	1	0	0	0	copy fasta	MEA1	chr6	43006143	43018946
MEAF6_chr1_37484993_37519766	1/0	t0001	4127	56	21	4	20	1	9	copy fasta	MEAF6	chr1	37484993	37519766
MEAF6_chr1_37484993_37519766	0/0	t0002	4133	45	5	8	27	0	5	copy fasta	MEAF6	chr1	37484993	37519766
MEAF6_chr1_37484993_37519766	0/0	t0003	4134	41	0	10	28	2	1	copy fasta	MEAF6	chr1	37484993	37519766
MEAF6_chr1_37484993_37519766	0/0	t0004	4128	40	4	4	31	0	1	copy fasta	MEAF6	chr1	37484993	37519766
MEAF6_chr1_37484993_37519766	0/0	t0005	4131	19	1	2	12	0	4	copy fasta	MEAF6	chr1	37484993	37519766
MEAF6_chr1_37484993_37519766	0/0	t0006	4133	19	0	4	10	1	4	copy fasta	MEAF6	chr1	37484993	37519766