JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MEAF6_chr1_37484993_37519766	0/0	t0007	4132	18	0	7	7	1	3	copy fasta	MEAF6	chr1	37484993	37519766
MEAF6_chr1_37484993_37519766	0/0	t0008	4133	18	9	7	2	0	0	copy fasta	MEAF6	chr1	37484993	37519766
MEAF6_chr1_37484993_37519766	0/1	t0009	4131	15	0	9	0	2	3	copy fasta	MEAF6	chr1	37484993	37519766
MEAF6_chr1_37484993_37519766	0/0	t0010	4129	11	1	1	9	0	0	copy fasta	MEAF6	chr1	37484993	37519766
MEAF6_chr1_37484993_37519766	0/0	t0011	4126	9	8	1	0	0	0	copy fasta	MEAF6	chr1	37484993	37519766
MEAF6_chr1_37484993_37519766	0/0	t0012	4135	7	0	0	7	0	0	copy fasta	MEAF6	chr1	37484993	37519766
MEAF6_chr1_37484993_37519766	0/0	t0013	4132	7	0	1	3	1	2	copy fasta	MEAF6	chr1	37484993	37519766
MEAF6_chr1_37484993_37519766	0/0	t0014	4128	7	7	0	0	0	0	copy fasta	MEAF6	chr1	37484993	37519766
MEAF6_chr1_37484993_37519766	0/0	t0015	4134	7	0	1	5	0	1	copy fasta	MEAF6	chr1	37484993	37519766
MEAF6_chr1_37484993_37519766	0/0	t0016	4130	7	0	2	1	2	2	copy fasta	MEAF6	chr1	37484993	37519766
MEAF6_chr1_37484993_37519766	0/0	t0017	4127	4	4	0	0	0	0	copy fasta	MEAF6	chr1	37484993	37519766
MEAF6_chr1_37484993_37519766	0/0	t0018	4131	4	0	2	0	1	1	copy fasta	MEAF6	chr1	37484993	37519766
MEAF6_chr1_37484993_37519766	0/0	t0019	4131	4	1	1	2	0	0	copy fasta	MEAF6	chr1	37484993	37519766
MEAF6_chr1_37484993_37519766	0/0	t0020	4127	3	3	0	0	0	0	copy fasta	MEAF6	chr1	37484993	37519766
MEAF6_chr1_37484993_37519766	0/0	t0021	4132	3	0	1	0	0	2	copy fasta	MEAF6	chr1	37484993	37519766
MEAF6_chr1_37484993_37519766	0/0	t0022	4128	3	0	0	3	0	0	copy fasta	MEAF6	chr1	37484993	37519766
MEAF6_chr1_37484993_37519766	0/0	t0023	4134	2	0	2	0	0	0	copy fasta	MEAF6	chr1	37484993	37519766
MEAF6_chr1_37484993_37519766	0/0	t0024	4132	2	1	1	0	0	0	copy fasta	MEAF6	chr1	37484993	37519766
MEAF6_chr1_37484993_37519766	0/0	t0025	4137	2	0	1	1	0	0	copy fasta	MEAF6	chr1	37484993	37519766
MEAF6_chr1_37484993_37519766	0/0	t0026	4134	2	0	0	2	0	0	copy fasta	MEAF6	chr1	37484993	37519766
MEAF6_chr1_37484993_37519766	0/0	t0027	4127	2	0	0	2	0	0	copy fasta	MEAF6	chr1	37484993	37519766
MEAF6_chr1_37484993_37519766	0/0	t0028	4131	2	2	0	0	0	0	copy fasta	MEAF6	chr1	37484993	37519766
MEAF6_chr1_37484993_37519766	0/0	t0029	4127	2	2	0	0	0	0	copy fasta	MEAF6	chr1	37484993	37519766
MEAF6_chr1_37484993_37519766	0/0	t0030	4128	2	2	0	0	0	0	copy fasta	MEAF6	chr1	37484993	37519766
MEAF6_chr1_37484993_37519766	0/0	t0031	4132	2	0	1	1	0	0	copy fasta	MEAF6	chr1	37484993	37519766
MEAF6_chr1_37484993_37519766	0/0	t0032	4127	2	0	0	2	0	0	copy fasta	MEAF6	chr1	37484993	37519766
MEAF6_chr1_37484993_37519766	0/0	t0033	4129	2	0	0	2	0	0	copy fasta	MEAF6	chr1	37484993	37519766
MEAF6_chr1_37484993_37519766	0/0	t0034	4133	1	0	1	0	0	0	copy fasta	MEAF6	chr1	37484993	37519766
MEAF6_chr1_37484993_37519766	0/0	t0035	4127	1	1	0	0	0	0	copy fasta	MEAF6	chr1	37484993	37519766
MEAF6_chr1_37484993_37519766	0/0	t0036	4128	1	1	0	0	0	0	copy fasta	MEAF6	chr1	37484993	37519766
MEAF6_chr1_37484993_37519766	0/0	t0037	4133	1	1	0	0	0	0	copy fasta	MEAF6	chr1	37484993	37519766
MEAF6_chr1_37484993_37519766	0/0	t0038	4133	1	0	0	1	0	0	copy fasta	MEAF6	chr1	37484993	37519766
MEAF6_chr1_37484993_37519766	0/0	t0039	4130	1	0	0	1	0	0	copy fasta	MEAF6	chr1	37484993	37519766
MEAF6_chr1_37484993_37519766	0/0	t0040	4134	1	0	0	0	0	1	copy fasta	MEAF6	chr1	37484993	37519766
MEAF6_chr1_37484993_37519766	0/0	t0041	4134	1	0	0	0	1	0	copy fasta	MEAF6	chr1	37484993	37519766
MEAF6_chr1_37484993_37519766	0/0	t0042	4138	1	0	0	1	0	0	copy fasta	MEAF6	chr1	37484993	37519766
MEAF6_chr1_37484993_37519766	0/0	t0043	4133	1	0	1	0	0	0	copy fasta	MEAF6	chr1	37484993	37519766
MEAF6_chr1_37484993_37519766	0/0	t0044	4135	1	0	0	1	0	0	copy fasta	MEAF6	chr1	37484993	37519766
MEAF6_chr1_37484993_37519766	0/0	t0045	4130	1	0	0	0	1	0	copy fasta	MEAF6	chr1	37484993	37519766
MEAF6_chr1_37484993_37519766	0/0	t0046	4128	1	1	0	0	0	0	copy fasta	MEAF6	chr1	37484993	37519766
MEAF6_chr1_37484993_37519766	0/0	t0047	4132	1	0	0	1	0	0	copy fasta	MEAF6	chr1	37484993	37519766
MEAF6_chr1_37484993_37519766	0/0	t0048	4132	1	0	1	0	0	0	copy fasta	MEAF6	chr1	37484993	37519766
MEAF6_chr1_37484993_37519766	0/0	t0049	4136	1	1	0	0	0	0	copy fasta	MEAF6	chr1	37484993	37519766
MEAF6_chr1_37484993_37519766	0/0	t0050	4131	1	1	0	0	0	0	copy fasta	MEAF6	chr1	37484993	37519766
MEAF6_chr1_37484993_37519766	0/0	t0051	4133	1	1	0	0	0	0	copy fasta	MEAF6	chr1	37484993	37519766
MEAF6_chr1_37484993_37519766	0/0	t0052	4138	1	0	1	0	0	0	copy fasta	MEAF6	chr1	37484993	37519766
MEAF6_chr1_37484993_37519766	0/0	t0053	4133	1	1	0	0	0	0	copy fasta	MEAF6	chr1	37484993	37519766
MEAF6_chr1_37484993_37519766	0/0	t0054	4133	1	1	0	0	0	0	copy fasta	MEAF6	chr1	37484993	37519766
MEAF6_chr1_37484993_37519766	0/0	t0055	4137	1	0	0	1	0	0	copy fasta	MEAF6	chr1	37484993	37519766
MEAF6_chr1_37484993_37519766	0/0	t0056	4137	1	0	0	0	0	1	copy fasta	MEAF6	chr1	37484993	37519766