JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MEAF6_chr1_37484993_37519766	0/0	t0057	4132	1	0	1	0	0	0	copy fasta	MEAF6	chr1	37484993	37519766
MEAF6_chr1_37484993_37519766	0/0	t0058	4129	1	1	0	0	0	0	copy fasta	MEAF6	chr1	37484993	37519766
MEAF6_chr1_37484993_37519766	0/0	t0059	4132	1	0	0	1	0	0	copy fasta	MEAF6	chr1	37484993	37519766
MEAF6_chr1_37484993_37519766	0/0	t0060	4132	1	1	0	0	0	0	copy fasta	MEAF6	chr1	37484993	37519766
MEAF6_chr1_37484993_37519766	0/0	t0061	4134	1	1	0	0	0	0	copy fasta	MEAF6	chr1	37484993	37519766
MEAF6_chr1_37484993_37519766	0/0	t0062	4129	1	1	0	0	0	0	copy fasta	MEAF6	chr1	37484993	37519766
MEAF6_chr1_37484993_37519766	0/0	t0063	4134	1	0	0	1	0	0	copy fasta	MEAF6	chr1	37484993	37519766
MEAF6_chr1_37484993_37519766	0/0	t0064	4131	1	0	0	1	0	0	copy fasta	MEAF6	chr1	37484993	37519766
MEAF6_chr1_37484993_37519766	0/0	t0065	4132	1	0	1	0	0	0	copy fasta	MEAF6	chr1	37484993	37519766
MEAF6_chr1_37484993_37519766	0/0	t0066	4126	1	1	0	0	0	0	copy fasta	MEAF6	chr1	37484993	37519766
MEAF6_chr1_37484993_37519766	0/0	t0067	4126	1	1	0	0	0	0	copy fasta	MEAF6	chr1	37484993	37519766
MEAF6_chr1_37484993_37519766	0/0	t0068	4130	1	1	0	0	0	0	copy fasta	MEAF6	chr1	37484993	37519766
MEAF6_chr1_37484993_37519766	0/0	t0069	4125	1	0	1	0	0	0	copy fasta	MEAF6	chr1	37484993	37519766
MEAF6_chr1_37484993_37519766	0/0	t0070	4127	1	0	0	1	0	0	copy fasta	MEAF6	chr1	37484993	37519766
MEAF6_chr1_37484993_37519766	0/0	t0071	4127	1	0	0	1	0	0	copy fasta	MEAF6	chr1	37484993	37519766
MEAF6_chr1_37484993_37519766	0/0	t0072	4127	1	1	0	0	0	0	copy fasta	MEAF6	chr1	37484993	37519766
MEAF6_chr1_37484993_37519766	0/0	t0073	4127	1	0	0	0	0	1	copy fasta	MEAF6	chr1	37484993	37519766
MEAF6_chr1_37484993_37519766	0/0	t0074	4127	1	1	0	0	0	0	copy fasta	MEAF6	chr1	37484993	37519766
MEAF6_chr1_37484993_37519766	0/0	t0075	4128	1	0	0	1	0	0	copy fasta	MEAF6	chr1	37484993	37519766
MEAF6_chr1_37484993_37519766	0/0	t0076	4129	1	0	0	1	0	0	copy fasta	MEAF6	chr1	37484993	37519766
MEAF6_chr1_37484993_37519766	0/0	t0077	4127	1	0	0	1	0	0	copy fasta	MEAF6	chr1	37484993	37519766
MEAF6_chr1_37484993_37519766	0/0	t0078	4127	1	1	0	0	0	0	copy fasta	MEAF6	chr1	37484993	37519766
MEAF6_chr1_37484993_37519766	0/0	t0079	4127	1	0	0	0	1	0	copy fasta	MEAF6	chr1	37484993	37519766
MEAF6_chr1_37484993_37519766	0/0	t0080	4130	1	0	0	0	1	0	copy fasta	MEAF6	chr1	37484993	37519766
MEAF6_chr1_37484993_37519766	0/0	t0081	4127	1	0	0	0	0	1	copy fasta	MEAF6	chr1	37484993	37519766
MEAF6_chr1_37484993_37519766	0/0	t0082	4127	1	0	0	1	0	0	copy fasta	MEAF6	chr1	37484993	37519766
MEAF6_chr1_37484993_37519766	0/0	t0083	4130	1	0	0	0	1	0	copy fasta	MEAF6	chr1	37484993	37519766
MEAF6_chr1_37484993_37519766	0/0	t0084	4129	1	0	0	1	0	0	copy fasta	MEAF6	chr1	37484993	37519766
MEAF6_chr1_37484993_37519766	0/0	t0085	4128	1	0	0	1	0	0	copy fasta	MEAF6	chr1	37484993	37519766
MEAF6_chr1_37484993_37519766	0/0	t0086	4128	1	0	0	1	0	0	copy fasta	MEAF6	chr1	37484993	37519766
MEAF6_chr1_37484993_37519766	0/0	t0087	4128	1	0	0	1	0	0	copy fasta	MEAF6	chr1	37484993	37519766
MEAF6_chr1_37484993_37519766	0/0	t0088	4128	1	0	0	1	0	0	copy fasta	MEAF6	chr1	37484993	37519766
MEAF6_chr1_37484993_37519766	0/0	t0089	4128	1	0	1	0	0	0	copy fasta	MEAF6	chr1	37484993	37519766
MEAF6_chr1_37484993_37519766	0/0	t0090	4128	1	0	0	1	0	0	copy fasta	MEAF6	chr1	37484993	37519766
MEAF6_chr1_37484993_37519766	0/0	t0091	4128	1	1	0	0	0	0	copy fasta	MEAF6	chr1	37484993	37519766
MEAF6_chr1_37484993_37519766	0/0	t0092	4127	1	1	0	0	0	0	copy fasta	MEAF6	chr1	37484993	37519766
MEAK7_chr16_84471355_84509659	0/0	t0001	3587	31	0	2	26	2	1	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0002	3568	17	0	1	16	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0003	3607	17	0	0	14	0	3	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0004	3606	15	0	1	13	1	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0005	3588	13	0	9	1	0	3	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0006	3625	13	0	4	5	1	3	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0007	3606	12	0	2	9	0	1	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0008	3682	9	0	0	9	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0009	3626	8	0	3	1	1	3	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0010	3587	7	0	4	1	1	1	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0011	3588	7	0	5	2	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0012	3549	6	0	2	3	0	1	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0013	3645	6	0	3	0	1	2	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0014	3644	5	0	0	4	1	0	copy fasta	MEAK7	chr16	84471355	84509659