JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MEAK7_chr16_84471355_84509659	0/0	t0015	3587	5	0	0	5	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/1	t0016	3550	5	0	0	3	0	1	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0017	3606	5	0	0	4	0	1	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0018	3683	4	3	1	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0019	3625	4	0	1	3	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0020	3606	4	4	0	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0021	3587	4	0	0	4	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0022	3606	4	0	0	4	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0023	3645	4	0	0	3	0	1	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0024	3606	3	1	1	0	1	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0025	3645	3	3	0	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0026	3663	3	0	0	2	0	1	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0027	3626	3	3	0	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0028	3721	3	3	0	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0029	3606	3	0	0	3	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0030	3607	3	3	0	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0031	3568	3	0	0	3	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0032	3587	3	0	1	0	2	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0033	3625	3	0	0	3	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0034	3644	3	1	0	2	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0035	3570	2	0	2	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0036	3587	2	0	1	0	0	1	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0037	3606	2	2	0	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0038	3625	2	0	0	2	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0039	3645	2	2	0	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0040	3778	2	2	0	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0041	3607	2	2	0	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0042	3740	2	2	0	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0043	3567	2	2	0	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0044	3587	2	2	0	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0045	3569	2	0	0	2	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0046	3568	2	0	1	1	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0047	3606	2	2	0	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0048	3625	2	0	0	0	0	2	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0049	3663	2	0	2	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0050	3587	2	0	2	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0051	3569	2	1	1	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0052	3757	2	2	0	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0053	3607	2	2	0	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0054	3530	2	0	0	2	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0055	3549	2	0	0	2	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0056	3568	2	0	0	0	0	2	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0057	3568	2	0	0	0	2	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0058	3569	2	0	2	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0059	3569	2	0	0	0	0	2	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0060	3889	2	0	2	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0061	3587	2	0	0	2	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0062	3606	2	0	1	0	0	1	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0063	3606	2	0	0	2	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0064	3607	2	0	0	1	1	0	copy fasta	MEAK7	chr16	84471355	84509659