JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MEAK7_chr16_84471355_84509659	0/0	t0115	3567	1	0	1	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0116	3625	1	0	1	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0117	3511	1	0	0	1	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0118	3530	1	0	0	0	0	1	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0119	3549	1	0	0	1	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0120	3871	1	1	0	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0121	3569	1	1	0	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0122	3586	1	0	0	0	1	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0123	3644	1	0	0	0	0	1	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0124	3644	1	0	1	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0125	3645	1	0	0	0	0	1	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0126	3645	1	1	0	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0127	3701	1	0	0	1	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0128	3891	1	0	1	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0129	3662	1	1	0	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0130	3964	1	0	0	0	1	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0131	3568	1	0	0	0	0	1	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0132	3569	1	1	0	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0133	3569	1	1	0	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0134	3587	1	0	0	0	0	1	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0135	3586	1	1	0	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0136	3586	1	1	0	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0137	3645	1	1	0	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0138	3757	1	1	0	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0139	3567	1	1	0	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0140	3607	1	1	0	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0141	3569	1	1	0	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0142	3834	1	1	0	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0143	3930	1	1	0	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0144	3815	1	0	0	1	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0145	3491	1	0	0	0	0	1	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0146	3606	1	0	0	1	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0147	3607	1	0	0	1	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0148	3644	1	0	0	1	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0149	3512	1	0	0	1	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0150	3834	1	0	0	1	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0151	3531	1	0	0	1	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0152	3530	1	0	0	1	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0153	3530	1	0	0	1	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0154	3531	1	0	0	1	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0155	3862	1	0	1	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0156	3861	1	0	0	1	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0157	3860	1	0	0	1	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0158	3853	1	0	0	1	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0159	3852	1	0	1	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0160	3851	1	0	1	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0161	3853	1	1	0	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0162	3549	1	0	0	0	1	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0163	3551	1	0	1	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0164	3550	1	0	0	1	0	0	copy fasta	MEAK7	chr16	84471355	84509659