JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MEAK7_chr16_84471355_84509659	0/0	t0165	3549	1	0	0	1	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0166	3872	1	1	0	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0167	3871	1	1	0	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0168	3568	1	0	0	1	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0169	3569	1	0	0	1	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0170	3568	1	0	0	1	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0171	3568	1	0	0	1	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0172	3568	1	0	0	1	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0173	3892	1	0	0	1	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0174	3891	1	0	0	1	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0175	3890	1	0	0	1	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0176	3587	1	0	0	0	0	1	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0177	3587	1	0	1	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0178	3587	1	0	0	1	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0179	3587	1	0	0	1	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0180	3588	1	0	1	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0181	3916	1	0	1	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0182	3908	1	0	0	1	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0183	3912	1	0	0	1	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0184	3626	1	0	0	0	0	1	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0185	3607	1	0	0	1	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0186	3608	1	0	0	1	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0187	3608	1	0	1	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0188	3606	1	0	0	1	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0189	3606	1	0	0	1	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0190	3606	1	0	0	1	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0191	3937	1	0	0	1	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0192	3933	1	0	0	1	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0193	3931	1	0	0	1	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0194	3626	1	0	0	1	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0195	3626	1	0	0	1	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0196	3625	1	0	1	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0197	3625	1	0	0	1	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0198	3948	1	0	0	1	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0199	3626	1	0	0	1	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0200	3624	1	0	0	1	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0201	3956	1	0	1	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0202	3955	1	0	1	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0203	3950	1	0	0	1	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0204	3625	1	0	0	1	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0205	3644	1	0	0	0	0	1	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0206	3663	1	0	0	1	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0207	3663	1	0	0	0	1	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0208	3683	1	0	0	0	0	1	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0209	3682	1	0	0	1	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0210	4004	1	0	0	0	0	1	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0211	3682	1	0	0	1	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0212	4004	1	1	0	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0213	4080	1	1	0	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0214	3853	1	0	0	1	0	0	copy fasta	MEAK7	chr16	84471355	84509659