JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MEAK7_chr16_84471355_84509659	0/0	t0215	3606	1	0	0	1	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0216	3587	1	0	0	1	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0217	3587	1	0	0	1	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0218	3606	1	0	1	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0219	3531	1	1	0	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0220	3549	1	0	1	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0221	3626	1	0	0	0	0	1	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0222	3568	1	1	0	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0223	3568	1	0	0	1	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0224	3626	1	1	0	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0225	3664	1	1	0	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0226	3683	1	1	0	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0227	3606	1	1	0	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0228	3682	1	1	0	0	0	0	copy fasta	MEAK7	chr16	84471355	84509659
MEAK7_chr16_84471355_84509659	0/0	t0229	3645	1	0	0	0	0	1	copy fasta	MEAK7	chr16	84471355	84509659
MECOM_chr3_169078507_169668712	0/0	t0001	1731	13	7	1	3	0	2	copy fasta	MECOM	chr3	169078507	169668712
MECOM_chr3_169078507_169668712	0/0	t0002	1735	13	5	1	4	0	3	copy fasta	MECOM	chr3	169078507	169668712
MECOM_chr3_169078507_169668712	0/0	t0003	1729	11	8	2	0	0	1	copy fasta	MECOM	chr3	169078507	169668712
MECOM_chr3_169078507_169668712	0/0	t0004	1733	11	4	0	7	0	0	copy fasta	MECOM	chr3	169078507	169668712
MECOM_chr3_169078507_169668712	0/0	t0005	1737	10	3	2	5	0	0	copy fasta	MECOM	chr3	169078507	169668712
MECOM_chr3_169078507_169668712	0/0	t0006	1741	10	4	1	3	0	2	copy fasta	MECOM	chr3	169078507	169668712
MECOM_chr3_169078507_169668712	0/0	t0007	1743	9	7	0	2	0	0	copy fasta	MECOM	chr3	169078507	169668712
MECOM_chr3_169078507_169668712	0/0	t0008	1739	6	5	0	0	0	1	copy fasta	MECOM	chr3	169078507	169668712
MECOM_chr3_169078507_169668712	0/0	t0009	1745	6	3	2	1	0	0	copy fasta	MECOM	chr3	169078507	169668712
MECOM_chr3_169078507_169668712	0/0	t0010	1735	5	0	2	3	0	0	copy fasta	MECOM	chr3	169078507	169668712
MECOM_chr3_169078507_169668712	0/0	t0011	1742	4	1	0	2	0	1	copy fasta	MECOM	chr3	169078507	169668712
MECOM_chr3_169078507_169668712	0/0	t0012	1727	4	2	0	0	0	2	copy fasta	MECOM	chr3	169078507	169668712
MECOM_chr3_169078507_169668712	0/0	t0013	1731	4	1	2	0	0	1	copy fasta	MECOM	chr3	169078507	169668712
MECOM_chr3_169078507_169668712	0/0	t0014	1747	4	3	0	1	0	0	copy fasta	MECOM	chr3	169078507	169668712
MECOM_chr3_169078507_169668712	0/0	t0015	1736	3	1	0	2	0	0	copy fasta	MECOM	chr3	169078507	169668712
MECOM_chr3_169078507_169668712	0/0	t0016	1733	3	1	1	1	0	0	copy fasta	MECOM	chr3	169078507	169668712
MECOM_chr3_169078507_169668712	0/0	t0017	1739	3	1	1	1	0	0	copy fasta	MECOM	chr3	169078507	169668712
MECOM_chr3_169078507_169668712	0/0	t0018	1730	2	0	0	2	0	0	copy fasta	MECOM	chr3	169078507	169668712
MECOM_chr3_169078507_169668712	0/0	t0019	1734	2	1	0	1	0	0	copy fasta	MECOM	chr3	169078507	169668712
MECOM_chr3_169078507_169668712	0/0	t0020	1743	2	0	0	1	1	0	copy fasta	MECOM	chr3	169078507	169668712
MECOM_chr3_169078507_169668712	0/0	t0021	1749	2	0	0	1	0	1	copy fasta	MECOM	chr3	169078507	169668712
MECOM_chr3_169078507_169668712	0/0	t0022	1739	1	0	0	0	0	1	copy fasta	MECOM	chr3	169078507	169668712
MECOM_chr3_169078507_169668712	0/0	t0023	1729	1	0	1	0	0	0	copy fasta	MECOM	chr3	169078507	169668712
MECOM_chr3_169078507_169668712	0/0	t0024	1731	1	0	1	0	0	0	copy fasta	MECOM	chr3	169078507	169668712
MECOM_chr3_169078507_169668712	0/0	t0025	1732	1	0	0	1	0	0	copy fasta	MECOM	chr3	169078507	169668712
MECOM_chr3_169078507_169668712	0/0	t0026	1729	1	0	0	1	0	0	copy fasta	MECOM	chr3	169078507	169668712
MECOM_chr3_169078507_169668712	0/0	t0027	1733	1	0	1	0	0	0	copy fasta	MECOM	chr3	169078507	169668712
MECOM_chr3_169078507_169668712	0/0	t0028	1743	1	0	0	1	0	0	copy fasta	MECOM	chr3	169078507	169668712
MECOM_chr3_169078507_169668712	0/0	t0029	1732	1	1	0	0	0	0	copy fasta	MECOM	chr3	169078507	169668712
MECOM_chr3_169078507_169668712	0/0	t0030	1734	1	1	0	0	0	0	copy fasta	MECOM	chr3	169078507	169668712
MECOM_chr3_169078507_169668712	0/0	t0031	1736	1	0	0	0	0	1	copy fasta	MECOM	chr3	169078507	169668712
MECOM_chr3_169078507_169668712	0/0	t0032	1738	1	0	0	1	0	0	copy fasta	MECOM	chr3	169078507	169668712
MECOM_chr3_169078507_169668712	0/0	t0033	1738	1	0	0	1	0	0	copy fasta	MECOM	chr3	169078507	169668712
MECOM_chr3_169078507_169668712	0/0	t0034	1743	1	0	0	1	0	0	copy fasta	MECOM	chr3	169078507	169668712
MECOM_chr3_169078507_169668712	0/0	t0035	1746	1	0	0	1	0	0	copy fasta	MECOM	chr3	169078507	169668712