Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ABL2_chr1_179094330_179234677	0/0	t0114	8687	1	0	0	1	0	0	copy fasta	ABL2	chr1	179094330	179234677
ABLIM1_chr10_114426112_114663275	0/0	t0001	5211	14	1	7	0	3	3	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0002	5216	12	0	2	6	2	2	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0003	5212	5	1	3	0	0	1	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0004	5225	5	0	3	2	0	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0005	5225	5	0	1	4	0	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0006	5213	4	0	0	4	0	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0007	5211	4	1	1	0	0	2	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0008	5234	4	3	1	0	0	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0009	5227	4	0	0	2	0	2	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0010	5229	4	0	0	4	0	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0011	5220	4	4	0	0	0	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0012	5215	4	4	0	0	0	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0013	5217	3	0	0	3	0	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0014	5230	3	0	0	3	0	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0015	5214	3	0	2	1	0	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0016	5214	3	0	2	0	0	1	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0017	5228	3	0	0	3	0	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0018	5225	3	0	1	1	0	1	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0019	5220	3	3	0	0	0	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0020	5218	2	2	0	0	0	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0021	5229	2	2	0	0	0	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0022	5234	2	0	0	2	0	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0023	5233	2	2	0	0	0	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0024	5229	2	0	0	2	0	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0025	5230	2	0	0	2	0	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0026	5227	2	2	0	0	0	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0027	5225	2	2	0	0	0	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0028	5223	2	0	1	0	0	1	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0029	5223	2	0	0	1	0	1	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0030	5223	2	2	0	0	0	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0031	5221	2	0	1	0	1	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0032	5218	2	0	2	0	0	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0033	5213	2	2	0	0	0	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0034	5213	2	2	0	0	0	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0035	5218	2	1	0	1	0	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0036	5216	2	0	0	2	0	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0037	5213	2	1	1	0	0	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0038	5213	2	2	0	0	0	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0039	5211	2	2	0	0	0	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0040	5211	2	0	1	1	0	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0041	5229	2	0	2	0	0	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0042	5229	2	2	0	0	0	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0043	5227	2	0	0	0	1	1	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0044	5216	1	0	0	1	0	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0045	5219	1	1	0	0	0	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0046	5223	1	0	0	1	0	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0047	5222	1	1	0	0	0	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0048	5221	1	0	0	1	0	0	copy fasta	ABLIM1	chr10	114426112	114663275
ABLIM1_chr10_114426112_114663275	0/0	t0049	5219	1	0	0	1	0	0	copy fasta	ABLIM1	chr10	114426112	114663275