Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ARHGAP12_chr10_31800398_31933831	0/0	t0018	2528	3	2	0	1	0	0	copy fasta	ARHGAP12	chr10	31800398	31933831
ARHGAP12_chr10_31800398_31933831	0/0	t0019	2524	3	2	1	0	0	0	copy fasta	ARHGAP12	chr10	31800398	31933831
ARHGAP12_chr10_31800398_31933831	0/0	t0020	2522	3	0	2	1	0	0	copy fasta	ARHGAP12	chr10	31800398	31933831
ARHGAP12_chr10_31800398_31933831	0/0	t0021	2520	3	0	0	3	0	0	copy fasta	ARHGAP12	chr10	31800398	31933831
ARHGAP12_chr10_31800398_31933831	0/0	t0022	2524	2	0	2	0	0	0	copy fasta	ARHGAP12	chr10	31800398	31933831
ARHGAP12_chr10_31800398_31933831	0/0	t0023	2522	2	2	0	0	0	0	copy fasta	ARHGAP12	chr10	31800398	31933831
ARHGAP12_chr10_31800398_31933831	0/0	t0024	2526	2	2	0	0	0	0	copy fasta	ARHGAP12	chr10	31800398	31933831
ARHGAP12_chr10_31800398_31933831	0/0	t0025	2526	2	2	0	0	0	0	copy fasta	ARHGAP12	chr10	31800398	31933831
ARHGAP12_chr10_31800398_31933831	0/1	t0026	2516	2	0	0	0	1	0	copy fasta	ARHGAP12	chr10	31800398	31933831
ARHGAP12_chr10_31800398_31933831	0/0	t0027	2537	2	2	0	0	0	0	copy fasta	ARHGAP12	chr10	31800398	31933831
ARHGAP12_chr10_31800398_31933831	0/0	t0028	2522	2	2	0	0	0	0	copy fasta	ARHGAP12	chr10	31800398	31933831
ARHGAP12_chr10_31800398_31933831	0/0	t0029	2518	2	0	0	0	0	2	copy fasta	ARHGAP12	chr10	31800398	31933831
ARHGAP12_chr10_31800398_31933831	0/0	t0030	2520	2	0	0	2	0	0	copy fasta	ARHGAP12	chr10	31800398	31933831
ARHGAP12_chr10_31800398_31933831	0/0	t0031	2522	1	0	0	1	0	0	copy fasta	ARHGAP12	chr10	31800398	31933831
ARHGAP12_chr10_31800398_31933831	0/0	t0032	2528	1	1	0	0	0	0	copy fasta	ARHGAP12	chr10	31800398	31933831
ARHGAP12_chr10_31800398_31933831	0/0	t0033	2518	1	0	0	0	0	1	copy fasta	ARHGAP12	chr10	31800398	31933831
ARHGAP12_chr10_31800398_31933831	0/0	t0034	2526	1	1	0	0	0	0	copy fasta	ARHGAP12	chr10	31800398	31933831
ARHGAP12_chr10_31800398_31933831	0/0	t0035	2528	1	0	0	1	0	0	copy fasta	ARHGAP12	chr10	31800398	31933831
ARHGAP12_chr10_31800398_31933831	0/0	t0036	2522	1	1	0	0	0	0	copy fasta	ARHGAP12	chr10	31800398	31933831
ARHGAP12_chr10_31800398_31933831	0/0	t0037	2518	1	1	0	0	0	0	copy fasta	ARHGAP12	chr10	31800398	31933831
ARHGAP12_chr10_31800398_31933831	0/0	t0038	2518	1	0	0	1	0	0	copy fasta	ARHGAP12	chr10	31800398	31933831
ARHGAP12_chr10_31800398_31933831	0/0	t0039	2524	1	0	0	1	0	0	copy fasta	ARHGAP12	chr10	31800398	31933831
ARHGAP12_chr10_31800398_31933831	0/0	t0040	2536	1	1	0	0	0	0	copy fasta	ARHGAP12	chr10	31800398	31933831
ARHGAP12_chr10_31800398_31933831	0/0	t0041	2525	1	0	0	1	0	0	copy fasta	ARHGAP12	chr10	31800398	31933831
ARHGAP12_chr10_31800398_31933831	0/0	t0042	2534	1	1	0	0	0	0	copy fasta	ARHGAP12	chr10	31800398	31933831
ARHGAP12_chr10_31800398_31933831	0/0	t0043	2518	1	1	0	0	0	0	copy fasta	ARHGAP12	chr10	31800398	31933831
ARHGAP12_chr10_31800398_31933831	0/0	t0044	2524	1	1	0	0	0	0	copy fasta	ARHGAP12	chr10	31800398	31933831
ARHGAP12_chr10_31800398_31933831	0/0	t0045	2532	1	1	0	0	0	0	copy fasta	ARHGAP12	chr10	31800398	31933831
ARHGAP12_chr10_31800398_31933831	0/0	t0046	2522	1	0	0	0	0	1	copy fasta	ARHGAP12	chr10	31800398	31933831
ARHGAP12_chr10_31800398_31933831	0/0	t0047	2518	1	0	0	1	0	0	copy fasta	ARHGAP12	chr10	31800398	31933831
ARHGAP12_chr10_31800398_31933831	0/0	t0048	2521	1	1	0	0	0	0	copy fasta	ARHGAP12	chr10	31800398	31933831
ARHGAP12_chr10_31800398_31933831	0/0	t0049	2524	1	1	0	0	0	0	copy fasta	ARHGAP12	chr10	31800398	31933831
ARHGAP12_chr10_31800398_31933831	0/0	t0050	2530	1	1	0	0	0	0	copy fasta	ARHGAP12	chr10	31800398	31933831
ARHGAP12_chr10_31800398_31933831	0/0	t0051	2522	1	0	1	0	0	0	copy fasta	ARHGAP12	chr10	31800398	31933831
ARHGAP12_chr10_31800398_31933831	0/0	t0052	2522	1	0	1	0	0	0	copy fasta	ARHGAP12	chr10	31800398	31933831
ARHGAP12_chr10_31800398_31933831	0/0	t0053	2522	1	1	0	0	0	0	copy fasta	ARHGAP12	chr10	31800398	31933831
ARHGAP12_chr10_31800398_31933831	0/0	t0054	2518	1	0	0	1	0	0	copy fasta	ARHGAP12	chr10	31800398	31933831
ARHGAP12_chr10_31800398_31933831	0/0	t0055	2520	1	0	0	1	0	0	copy fasta	ARHGAP12	chr10	31800398	31933831
ARHGAP15_chr2_143124419_143773352	1/1	t0001	243	161	48	32	48	4	27	copy fasta	ARHGAP15	chr2	143124419	143773352
ARHGAP15_chr2_143124419_143773352	0/0	t0002	243	1	0	0	0	0	1	copy fasta	ARHGAP15	chr2	143124419	143773352
ARHGAP17_chr16_24914389_25020369	1/1	t0001	850	207	61	43	76	6	19	copy fasta	ARHGAP17	chr16	24914389	25020369
ARHGAP17_chr16_24914389_25020369	0/0	t0002	850	8	8	0	0	0	0	copy fasta	ARHGAP17	chr16	24914389	25020369
ARHGAP17_chr16_24914389_25020369	0/0	t0003	850	8	6	2	0	0	0	copy fasta	ARHGAP17	chr16	24914389	25020369
ARHGAP17_chr16_24914389_25020369	0/0	t0004	850	6	5	1	0	0	0	copy fasta	ARHGAP17	chr16	24914389	25020369
ARHGAP17_chr16_24914389_25020369	0/0	t0005	849	6	5	0	0	0	1	copy fasta	ARHGAP17	chr16	24914389	25020369
ARHGAP17_chr16_24914389_25020369	0/0	t0006	850	2	0	0	0	2	0	copy fasta	ARHGAP17	chr16	24914389	25020369
ARHGAP17_chr16_24914389_25020369	0/0	t0007	850	2	2	0	0	0	0	copy fasta	ARHGAP17	chr16	24914389	25020369
ARHGAP17_chr16_24914389_25020369	0/0	t0008	849	1	1	0	0	0	0	copy fasta	ARHGAP17	chr16	24914389	25020369
ARHGAP18_chr6_129571132_129715177	1/1	t0001	2423	143	21	40	63	8	9	copy fasta	ARHGAP18	chr6	129571132	129715177
ARHGAP18_chr6_129571132_129715177	0/0	t0002	2422	47	13	8	16	2	8	copy fasta	ARHGAP18	chr6	129571132	129715177