JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MECOM_chr3_169078507_169668712	0/0	t0036	1746	1	0	1	0	0	0	copy fasta	MECOM	chr3	169078507	169668712
MECOM_chr3_169078507_169668712	0/0	t0037	1729	1	0	0	1	0	0	copy fasta	MECOM	chr3	169078507	169668712
MECOM_chr3_169078507_169668712	0/0	t0038	1735	1	1	0	0	0	0	copy fasta	MECOM	chr3	169078507	169668712
MECOM_chr3_169078507_169668712	0/0	t0039	1737	1	1	0	0	0	0	copy fasta	MECOM	chr3	169078507	169668712
MECOM_chr3_169078507_169668712	0/0	t0040	1737	1	1	0	0	0	0	copy fasta	MECOM	chr3	169078507	169668712
MECOM_chr3_169078507_169668712	0/0	t0041	1737	1	0	0	1	0	0	copy fasta	MECOM	chr3	169078507	169668712
MECOM_chr3_169078507_169668712	0/0	t0042	1741	1	0	0	1	0	0	copy fasta	MECOM	chr3	169078507	169668712
MECOM_chr3_169078507_169668712	0/0	t0043	1744	1	0	1	0	0	0	copy fasta	MECOM	chr3	169078507	169668712
MECOM_chr3_169078507_169668712	0/0	t0044	1746	1	0	0	1	0	0	copy fasta	MECOM	chr3	169078507	169668712
MECOM_chr3_169078507_169668712	0/0	t0045	1745	1	1	0	0	0	0	copy fasta	MECOM	chr3	169078507	169668712
MECOM_chr3_169078507_169668712	0/0	t0046	1749	1	1	0	0	0	0	copy fasta	MECOM	chr3	169078507	169668712
MECOM_chr3_169078507_169668712	0/0	t0047	1752	1	1	0	0	0	0	copy fasta	MECOM	chr3	169078507	169668712
MECOM_chr3_169078507_169668712	0/0	t0048	1751	1	0	0	0	1	0	copy fasta	MECOM	chr3	169078507	169668712
MECOM_chr3_169078507_169668712	0/0	t0049	1754	1	0	0	1	0	0	copy fasta	MECOM	chr3	169078507	169668712
MECOM_chr3_169078507_169668712	0/0	t0050	1753	1	1	0	0	0	0	copy fasta	MECOM	chr3	169078507	169668712
MECOM_chr3_169078507_169668712	0/0	t0051	1753	1	1	0	0	0	0	copy fasta	MECOM	chr3	169078507	169668712
MECOM_chr3_169078507_169668712	0/0	t0052	1755	1	1	0	0	0	0	copy fasta	MECOM	chr3	169078507	169668712
MECOM_chr3_169078507_169668712	0/0	t0053	1757	1	1	0	0	0	0	copy fasta	MECOM	chr3	169078507	169668712
MECOM_chr3_169078507_169668712	0/0	t0054	1741	1	1	0	0	0	0	copy fasta	MECOM	chr3	169078507	169668712
MECP2_chrX_154016573_154102717	0/0	t0001	9007	67	7	12	43	0	5	copy fasta	MECP2	chrX	154016573	154102717
MECP2_chrX_154016573_154102717	0/1	t0002	9007	49	5	11	23	4	5	copy fasta	MECP2	chrX	154016573	154102717
MECP2_chrX_154016573_154102717	0/0	t0003	9007	8	0	0	7	0	1	copy fasta	MECP2	chrX	154016573	154102717
MECP2_chrX_154016573_154102717	0/0	t0004	9007	8	7	1	0	0	0	copy fasta	MECP2	chrX	154016573	154102717
MECP2_chrX_154016573_154102717	0/0	t0005	9008	7	7	0	0	0	0	copy fasta	MECP2	chrX	154016573	154102717
MECP2_chrX_154016573_154102717	0/0	t0006	9007	6	5	1	0	0	0	copy fasta	MECP2	chrX	154016573	154102717
MECP2_chrX_154016573_154102717	1/0	t0007	9007	4	0	0	3	0	0	copy fasta	MECP2	chrX	154016573	154102717
MECP2_chrX_154016573_154102717	0/0	t0008	9007	4	4	0	0	0	0	copy fasta	MECP2	chrX	154016573	154102717
MECP2_chrX_154016573_154102717	0/0	t0009	9007	4	0	0	4	0	0	copy fasta	MECP2	chrX	154016573	154102717
MECP2_chrX_154016573_154102717	0/0	t0010	9007	3	0	0	1	0	2	copy fasta	MECP2	chrX	154016573	154102717
MECP2_chrX_154016573_154102717	0/0	t0011	9008	3	0	0	3	0	0	copy fasta	MECP2	chrX	154016573	154102717
MECP2_chrX_154016573_154102717	0/0	t0012	9007	3	3	0	0	0	0	copy fasta	MECP2	chrX	154016573	154102717
MECP2_chrX_154016573_154102717	0/0	t0013	9006	3	3	0	0	0	0	copy fasta	MECP2	chrX	154016573	154102717
MECP2_chrX_154016573_154102717	0/0	t0014	9007	3	3	0	0	0	0	copy fasta	MECP2	chrX	154016573	154102717
MECP2_chrX_154016573_154102717	0/0	t0015	9005	2	0	2	0	0	0	copy fasta	MECP2	chrX	154016573	154102717
MECP2_chrX_154016573_154102717	0/0	t0016	9005	2	2	0	0	0	0	copy fasta	MECP2	chrX	154016573	154102717
MECP2_chrX_154016573_154102717	0/0	t0017	9008	2	0	0	1	0	1	copy fasta	MECP2	chrX	154016573	154102717
MECP2_chrX_154016573_154102717	0/0	t0018	9008	2	0	0	2	0	0	copy fasta	MECP2	chrX	154016573	154102717
MECP2_chrX_154016573_154102717	0/0	t0019	9007	2	2	0	0	0	0	copy fasta	MECP2	chrX	154016573	154102717
MECP2_chrX_154016573_154102717	0/0	t0020	9008	2	2	0	0	0	0	copy fasta	MECP2	chrX	154016573	154102717
MECP2_chrX_154016573_154102717	0/0	t0021	9007	2	2	0	0	0	0	copy fasta	MECP2	chrX	154016573	154102717
MECP2_chrX_154016573_154102717	0/0	t0022	9007	2	2	0	0	0	0	copy fasta	MECP2	chrX	154016573	154102717
MECP2_chrX_154016573_154102717	0/0	t0023	9002	1	0	0	1	0	0	copy fasta	MECP2	chrX	154016573	154102717
MECP2_chrX_154016573_154102717	0/0	t0024	9006	1	0	0	1	0	0	copy fasta	MECP2	chrX	154016573	154102717
MECP2_chrX_154016573_154102717	0/0	t0025	9011	1	1	0	0	0	0	copy fasta	MECP2	chrX	154016573	154102717
MECP2_chrX_154016573_154102717	0/0	t0026	9007	1	0	1	0	0	0	copy fasta	MECP2	chrX	154016573	154102717
MECP2_chrX_154016573_154102717	0/0	t0027	9007	1	0	1	0	0	0	copy fasta	MECP2	chrX	154016573	154102717
MECP2_chrX_154016573_154102717	0/0	t0028	9007	1	1	0	0	0	0	copy fasta	MECP2	chrX	154016573	154102717
MECP2_chrX_154016573_154102717	0/0	t0029	9007	1	1	0	0	0	0	copy fasta	MECP2	chrX	154016573	154102717
MECP2_chrX_154016573_154102717	0/0	t0030	9007	1	1	0	0	0	0	copy fasta	MECP2	chrX	154016573	154102717
MECP2_chrX_154016573_154102717	0/0	t0031	9008	1	0	1	0	0	0	copy fasta	MECP2	chrX	154016573	154102717