JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MECP2_chrX_154016573_154102717	0/0	t0032	9008	1	1	0	0	0	0	copy fasta	MECP2	chrX	154016573	154102717
MECP2_chrX_154016573_154102717	0/0	t0033	9007	1	0	1	0	0	0	copy fasta	MECP2	chrX	154016573	154102717
MECP2_chrX_154016573_154102717	0/0	t0034	9009	1	1	0	0	0	0	copy fasta	MECP2	chrX	154016573	154102717
MECP2_chrX_154016573_154102717	0/0	t0035	9005	1	0	1	0	0	0	copy fasta	MECP2	chrX	154016573	154102717
MECP2_chrX_154016573_154102717	0/0	t0036	9007	1	0	0	0	1	0	copy fasta	MECP2	chrX	154016573	154102717
MECP2_chrX_154016573_154102717	0/0	t0037	9006	1	0	0	1	0	0	copy fasta	MECP2	chrX	154016573	154102717
MECP2_chrX_154016573_154102717	0/0	t0038	9007	1	0	0	1	0	0	copy fasta	MECP2	chrX	154016573	154102717
MECP2_chrX_154016573_154102717	0/0	t0039	9007	1	0	1	0	0	0	copy fasta	MECP2	chrX	154016573	154102717
MECP2_chrX_154016573_154102717	0/0	t0040	9007	1	1	0	0	0	0	copy fasta	MECP2	chrX	154016573	154102717
MECP2_chrX_154016573_154102717	0/0	t0041	9008	1	0	0	1	0	0	copy fasta	MECP2	chrX	154016573	154102717
MECP2_chrX_154016573_154102717	0/0	t0042	9007	1	0	0	1	0	0	copy fasta	MECP2	chrX	154016573	154102717
MECP2_chrX_154016573_154102717	0/0	t0043	9008	1	1	0	0	0	0	copy fasta	MECP2	chrX	154016573	154102717
MECP2_chrX_154016573_154102717	0/0	t0044	9007	1	0	0	0	0	1	copy fasta	MECP2	chrX	154016573	154102717
MECP2_chrX_154016573_154102717	0/0	t0045	9007	1	0	0	1	0	0	copy fasta	MECP2	chrX	154016573	154102717
MECP2_chrX_154016573_154102717	0/0	t0046	9007	1	0	1	0	0	0	copy fasta	MECP2	chrX	154016573	154102717
MECP2_chrX_154016573_154102717	0/0	t0047	9008	1	0	0	1	0	0	copy fasta	MECP2	chrX	154016573	154102717
MECP2_chrX_154016573_154102717	0/0	t0048	9006	1	1	0	0	0	0	copy fasta	MECP2	chrX	154016573	154102717
MECP2_chrX_154016573_154102717	0/0	t0049	9007	1	0	1	0	0	0	copy fasta	MECP2	chrX	154016573	154102717
MECP2_chrX_154016573_154102717	0/0	t0050	9007	1	1	0	0	0	0	copy fasta	MECP2	chrX	154016573	154102717
MECP2_chrX_154016573_154102717	0/0	t0051	9007	1	0	0	0	0	1	copy fasta	MECP2	chrX	154016573	154102717
MECP2_chrX_154016573_154102717	0/0	t0052	9006	1	0	0	1	0	0	copy fasta	MECP2	chrX	154016573	154102717
MECP2_chrX_154016573_154102717	0/0	t0053	9007	1	0	1	0	0	0	copy fasta	MECP2	chrX	154016573	154102717
MECP2_chrX_154016573_154102717	0/0	t0054	9008	1	0	0	1	0	0	copy fasta	MECP2	chrX	154016573	154102717
MECP2_chrX_154016573_154102717	0/0	t0055	9007	1	0	0	1	0	0	copy fasta	MECP2	chrX	154016573	154102717
MECP2_chrX_154016573_154102717	0/0	t0056	9007	1	1	0	0	0	0	copy fasta	MECP2	chrX	154016573	154102717
MECP2_chrX_154016573_154102717	0/0	t0057	9007	1	0	1	0	0	0	copy fasta	MECP2	chrX	154016573	154102717
MECP2_chrX_154016573_154102717	0/0	t0058	9007	1	1	0	0	0	0	copy fasta	MECP2	chrX	154016573	154102717
MECP2_chrX_154016573_154102717	0/0	t0059	9007	1	0	1	0	0	0	copy fasta	MECP2	chrX	154016573	154102717
MECP2_chrX_154016573_154102717	0/0	t0060	9006	1	1	0	0	0	0	copy fasta	MECP2	chrX	154016573	154102717
MECP2_chrX_154016573_154102717	0/0	t0061	9007	1	0	0	1	0	0	copy fasta	MECP2	chrX	154016573	154102717
MECP2_chrX_154016573_154102717	0/0	t0062	9007	1	1	0	0	0	0	copy fasta	MECP2	chrX	154016573	154102717
MECP2_chrX_154016573_154102717	0/0	t0063	9007	1	1	0	0	0	0	copy fasta	MECP2	chrX	154016573	154102717
MECP2_chrX_154016573_154102717	0/0	t0064	9007	1	1	0	0	0	0	copy fasta	MECP2	chrX	154016573	154102717
MECR_chr1_29187657_29235934	0/0	t0001	1394	159	41	26	69	5	18	copy fasta	MECR	chr1	29187657	29235934
MECR_chr1_29187657_29235934	1/1	t0002	1394	127	26	22	68	0	9	copy fasta	MECR	chr1	29187657	29235934
MECR_chr1_29187657_29235934	0/0	t0003	1395	65	15	20	15	3	12	copy fasta	MECR	chr1	29187657	29235934
MECR_chr1_29187657_29235934	0/0	t0004	1394	10	0	8	0	0	2	copy fasta	MECR	chr1	29187657	29235934
MECR_chr1_29187657_29235934	0/0	t0005	1394	6	5	1	0	0	0	copy fasta	MECR	chr1	29187657	29235934
MECR_chr1_29187657_29235934	0/0	t0006	1394	5	0	0	5	0	0	copy fasta	MECR	chr1	29187657	29235934
MECR_chr1_29187657_29235934	0/0	t0007	1394	3	0	0	3	0	0	copy fasta	MECR	chr1	29187657	29235934
MECR_chr1_29187657_29235934	0/0	t0008	1394	2	2	0	0	0	0	copy fasta	MECR	chr1	29187657	29235934
MECR_chr1_29187657_29235934	0/0	t0009	1394	1	0	0	0	0	1	copy fasta	MECR	chr1	29187657	29235934
MECR_chr1_29187657_29235934	0/0	t0010	1394	1	1	0	0	0	0	copy fasta	MECR	chr1	29187657	29235934
MECR_chr1_29187657_29235934	0/0	t0011	1395	1	0	0	1	0	0	copy fasta	MECR	chr1	29187657	29235934
MECR_chr1_29187657_29235934	0/0	t0012	1394	1	0	0	1	0	0	copy fasta	MECR	chr1	29187657	29235934
MECR_chr1_29187657_29235934	0/0	t0013	1394	1	0	1	0	0	0	copy fasta	MECR	chr1	29187657	29235934
MECR_chr1_29187657_29235934	0/0	t0014	1395	1	1	0	0	0	0	copy fasta	MECR	chr1	29187657	29235934
MECR_chr1_29187657_29235934	0/0	t0015	1394	1	1	0	0	0	0	copy fasta	MECR	chr1	29187657	29235934
MED10_chr5_6366874_6383547	0/0	t0001	694	198	46	33	92	8	19	copy fasta	MED10	chr5	6366874	6383547
MED10_chr5_6366874_6383547	0/1	t0002	694	191	29	38	94	8	21	copy fasta	MED10	chr5	6366874	6383547