JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MED10_chr5_6366874_6383547	0/0	t0003	694	13	12	1	0	0	0	copy fasta	MED10	chr5	6366874	6383547
MED10_chr5_6366874_6383547	0/0	t0004	694	4	4	0	0	0	0	copy fasta	MED10	chr5	6366874	6383547
MED10_chr5_6366874_6383547	0/0	t0005	693	3	0	0	3	0	0	copy fasta	MED10	chr5	6366874	6383547
MED10_chr5_6366874_6383547	0/0	t0006	694	2	2	0	0	0	0	copy fasta	MED10	chr5	6366874	6383547
MED10_chr5_6366874_6383547	0/0	t0007	694	2	0	0	1	0	1	copy fasta	MED10	chr5	6366874	6383547
MED10_chr5_6366874_6383547	0/0	t0008	694	1	1	0	0	0	0	copy fasta	MED10	chr5	6366874	6383547
MED10_chr5_6366874_6383547	1/0	t0009	694	1	0	0	0	0	0	copy fasta	MED10	chr5	6366874	6383547
MED10_chr5_6366874_6383547	0/0	t0010	694	1	1	0	0	0	0	copy fasta	MED10	chr5	6366874	6383547
MED10_chr5_6366874_6383547	0/0	t0011	693	1	1	0	0	0	0	copy fasta	MED10	chr5	6366874	6383547
MED10_chr5_6366874_6383547	0/0	t0012	694	1	1	0	0	0	0	copy fasta	MED10	chr5	6366874	6383547
MED10_chr5_6366874_6383547	0/0	t0013	694	1	1	0	0	0	0	copy fasta	MED10	chr5	6366874	6383547
MED10_chr5_6366874_6383547	0/0	t0014	694	1	0	0	0	0	1	copy fasta	MED10	chr5	6366874	6383547
MED11_chr17_4726428_4738607	0/1	t0001	483	256	50	48	115	10	32	copy fasta	MED11	chr17	4726428	4738607
MED11_chr17_4726428_4738607	0/0	t0002	483	121	18	21	65	5	12	copy fasta	MED11	chr17	4726428	4738607
MED11_chr17_4726428_4738607	0/0	t0003	483	19	11	5	0	1	2	copy fasta	MED11	chr17	4726428	4738607
MED11_chr17_4726428_4738607	1/0	t0004	483	11	9	0	1	0	0	copy fasta	MED11	chr17	4726428	4738607
MED11_chr17_4726428_4738607	0/0	t0005	483	8	0	1	7	0	0	copy fasta	MED11	chr17	4726428	4738607
MED11_chr17_4726428_4738607	0/0	t0006	483	4	0	0	4	0	0	copy fasta	MED11	chr17	4726428	4738607
MED11_chr17_4726428_4738607	0/0	t0007	482	4	4	0	0	0	0	copy fasta	MED11	chr17	4726428	4738607
MED11_chr17_4726428_4738607	0/0	t0008	483	3	3	0	0	0	0	copy fasta	MED11	chr17	4726428	4738607
MED11_chr17_4726428_4738607	0/0	t0009	483	2	0	0	2	0	0	copy fasta	MED11	chr17	4726428	4738607
MED11_chr17_4726428_4738607	0/0	t0010	483	1	1	0	0	0	0	copy fasta	MED11	chr17	4726428	4738607
MED11_chr17_4726428_4738607	0/0	t0011	483	1	1	0	0	0	0	copy fasta	MED11	chr17	4726428	4738607
MED11_chr17_4726428_4738607	0/0	t0012	483	1	1	0	0	0	0	copy fasta	MED11	chr17	4726428	4738607
MED11_chr17_4726428_4738607	0/0	t0013	483	1	0	1	0	0	0	copy fasta	MED11	chr17	4726428	4738607
MED12L_chr3_151080664_151441653	0/0	t0001	4241	60	8	6	41	1	4	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/1	t0002	4247	51	12	6	23	2	7	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	1/0	t0003	4252	28	0	8	11	1	7	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	t0004	4247	28	0	12	10	3	3	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	t0005	4247	9	1	1	4	0	3	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	t0006	4246	9	1	4	0	4	0	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	t0007	4247	7	7	0	0	0	0	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	t0008	4250	7	0	6	0	0	1	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	t0009	4246	6	5	0	0	0	1	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	t0010	4238	5	5	0	0	0	0	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	t0011	4246	5	4	1	0	0	0	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	t0012	4246	4	2	2	0	0	0	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	t0013	4245	4	0	0	4	0	0	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	t0014	4248	3	0	0	0	3	0	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	t0015	4246	3	0	0	1	0	2	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	t0016	4240	2	1	0	1	0	0	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	t0017	4236	2	0	0	2	0	0	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	t0018	4246	2	2	0	0	0	0	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	t0019	4251	2	0	1	1	0	0	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	t0020	4248	2	2	0	0	0	0	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	t0021	4251	2	1	1	0	0	0	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	t0022	4247	2	0	0	2	0	0	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	t0023	4248	2	1	0	0	0	1	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	t0024	4238	2	2	0	0	0	0	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	t0025	4241	1	0	1	0	0	0	copy fasta	MED12L	chr3	151080664	151441653