JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MED12L_chr3_151080664_151441653	0/0	t0026	4241	1	0	0	1	0	0	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	t0027	4245	1	1	0	0	0	0	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	t0028	4241	1	0	0	1	0	0	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	t0029	4241	1	0	0	0	0	1	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	t0030	4244	1	0	0	1	0	0	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	t0031	4241	1	0	0	0	0	1	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	t0032	4248	1	1	0	0	0	0	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	t0033	4252	1	0	0	1	0	0	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	t0034	4250	1	1	0	0	0	0	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	t0035	4256	1	0	0	0	0	1	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	t0036	4252	1	0	0	1	0	0	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	t0037	4251	1	1	0	0	0	0	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	t0038	4250	1	1	0	0	0	0	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	t0039	4246	1	1	0	0	0	0	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	t0040	4245	1	0	0	1	0	0	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	t0041	4251	1	0	1	0	0	0	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	t0042	4242	1	1	0	0	0	0	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	t0043	4247	1	1	0	0	0	0	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	t0044	4247	1	1	0	0	0	0	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	t0045	4237	1	1	0	0	0	0	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	t0046	4247	1	0	1	0	0	0	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	t0047	4240	1	0	0	1	0	0	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	t0048	4240	1	0	0	1	0	0	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	t0049	4246	1	0	0	1	0	0	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	t0050	4250	1	1	0	0	0	0	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	t0051	4246	1	0	0	1	0	0	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	t0052	4246	1	1	0	0	0	0	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	t0053	4247	1	1	0	0	0	0	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	t0054	4245	1	0	0	1	0	0	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	t0055	4247	1	1	0	0	0	0	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	t0056	4248	1	0	0	1	0	0	copy fasta	MED12L	chr3	151080664	151441653
MED12L_chr3_151080664_151441653	0/0	t0057	4228	1	0	1	0	0	0	copy fasta	MED12L	chr3	151080664	151441653
MED12_chrX_71113596_71147450	1/1	t0001	392	273	80	53	104	6	28	copy fasta	MED12	chrX	71113596	71147450
MED13L_chr12_115953576_116282693	0/0	t0001	3371	143	37	13	79	7	7	copy fasta	MED13L	chr12	115953576	116282693
MED13L_chr12_115953576_116282693	0/1	t0002	3371	52	5	8	24	5	9	copy fasta	MED13L	chr12	115953576	116282693
MED13L_chr12_115953576_116282693	0/0	t0003	3372	20	5	4	8	0	3	copy fasta	MED13L	chr12	115953576	116282693
MED13L_chr12_115953576_116282693	0/0	t0004	3371	16	2	8	0	3	3	copy fasta	MED13L	chr12	115953576	116282693
MED13L_chr12_115953576_116282693	0/0	t0005	3371	5	1	3	0	0	1	copy fasta	MED13L	chr12	115953576	116282693
MED13L_chr12_115953576_116282693	0/0	t0006	3372	4	0	2	2	0	0	copy fasta	MED13L	chr12	115953576	116282693
MED13L_chr12_115953576_116282693	0/0	t0007	3373	2	0	0	0	0	2	copy fasta	MED13L	chr12	115953576	116282693
MED13L_chr12_115953576_116282693	0/0	t0008	3372	2	0	2	0	0	0	copy fasta	MED13L	chr12	115953576	116282693
MED13L_chr12_115953576_116282693	0/0	t0009	3372	2	0	0	1	0	1	copy fasta	MED13L	chr12	115953576	116282693
MED13L_chr12_115953576_116282693	0/0	t0010	3372	1	0	0	1	0	0	copy fasta	MED13L	chr12	115953576	116282693
MED13L_chr12_115953576_116282693	0/0	t0011	3371	1	0	0	0	1	0	copy fasta	MED13L	chr12	115953576	116282693
MED13L_chr12_115953576_116282693	0/0	t0012	3371	1	1	0	0	0	0	copy fasta	MED13L	chr12	115953576	116282693
MED13L_chr12_115953576_116282693	0/0	t0013	3371	1	1	0	0	0	0	copy fasta	MED13L	chr12	115953576	116282693
MED13L_chr12_115953576_116282693	0/0	t0014	3371	1	0	0	1	0	0	copy fasta	MED13L	chr12	115953576	116282693
MED13L_chr12_115953576_116282693	1/0	t0015	3253	1	0	0	0	0	0	copy fasta	MED13L	chr12	115953576	116282693
MED13L_chr12_115953576_116282693	0/0	t0016	3371	1	1	0	0	0	0	copy fasta	MED13L	chr12	115953576	116282693
MED13L_chr12_115953576_116282693	0/0	t0017	3371	1	1	0	0	0	0	copy fasta	MED13L	chr12	115953576	116282693