JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MED15_chr22_20502610_20592619	0/0	t0009	985	1	1	0	0	0	0	copy fasta	MED15	chr22	20502610	20592619
MED15_chr22_20502610_20592619	0/0	t0010	985	1	1	0	0	0	0	copy fasta	MED15	chr22	20502610	20592619
MED15_chr22_20502610_20592619	0/0	t0011	985	1	0	0	1	0	0	copy fasta	MED15	chr22	20502610	20592619
MED15_chr22_20502610_20592619	0/0	t0012	985	1	0	0	1	0	0	copy fasta	MED15	chr22	20502610	20592619
MED15_chr22_20502610_20592619	0/0	t0013	985	1	0	1	0	0	0	copy fasta	MED15	chr22	20502610	20592619
MED16_chr19_862963_898187	1/0	t0001	259	45	15	11	13	0	5	copy fasta	MED16	chr19	862963	898187
MED16_chr19_862963_898187	0/0	t0002	259	3	0	1	2	0	0	copy fasta	MED16	chr19	862963	898187
MED16_chr19_862963_898187	0/0	t0003	259	2	0	0	0	0	2	copy fasta	MED16	chr19	862963	898187
MED16_chr19_862963_898187	0/1	t0004	259	1	0	0	0	0	0	copy fasta	MED16	chr19	862963	898187
MED16_chr19_862963_898187	0/0	t0005	259	1	1	0	0	0	0	copy fasta	MED16	chr19	862963	898187
MED16_chr19_862963_898187	0/0	t0006	259	1	1	0	0	0	0	copy fasta	MED16	chr19	862963	898187
MED16_chr19_862963_898187	0/0	t0007	259	1	0	0	0	0	1	copy fasta	MED16	chr19	862963	898187
MED16_chr19_862963_898187	0/0	t0008	259	1	0	0	1	0	0	copy fasta	MED16	chr19	862963	898187
MED16_chr19_862963_898187	0/0	t0009	259	1	1	0	0	0	0	copy fasta	MED16	chr19	862963	898187
MED17_chr11_93779282_93819963	1/1	t0001	3132	215	56	27	94	9	27	copy fasta	MED17	chr11	93779282	93819963
MED17_chr11_93779282_93819963	0/0	t0002	3133	35	4	5	21	2	3	copy fasta	MED17	chr11	93779282	93819963
MED17_chr11_93779282_93819963	0/0	t0003	3132	14	0	0	14	0	0	copy fasta	MED17	chr11	93779282	93819963
MED17_chr11_93779282_93819963	0/0	t0004	3133	9	0	3	5	0	1	copy fasta	MED17	chr11	93779282	93819963
MED17_chr11_93779282_93819963	0/0	t0005	3132	6	0	3	0	1	2	copy fasta	MED17	chr11	93779282	93819963
MED17_chr11_93779282_93819963	0/0	t0006	3143	5	4	1	0	0	0	copy fasta	MED17	chr11	93779282	93819963
MED17_chr11_93779282_93819963	0/0	t0007	3130	3	3	0	0	0	0	copy fasta	MED17	chr11	93779282	93819963
MED17_chr11_93779282_93819963	0/0	t0008	3143	3	2	1	0	0	0	copy fasta	MED17	chr11	93779282	93819963
MED17_chr11_93779282_93819963	0/0	t0009	3130	2	2	0	0	0	0	copy fasta	MED17	chr11	93779282	93819963
MED17_chr11_93779282_93819963	0/0	t0010	3132	2	2	0	0	0	0	copy fasta	MED17	chr11	93779282	93819963
MED17_chr11_93779282_93819963	0/0	t0011	3130	2	2	0	0	0	0	copy fasta	MED17	chr11	93779282	93819963
MED17_chr11_93779282_93819963	0/0	t0012	3130	2	2	0	0	0	0	copy fasta	MED17	chr11	93779282	93819963
MED17_chr11_93779282_93819963	0/0	t0013	3132	2	2	0	0	0	0	copy fasta	MED17	chr11	93779282	93819963
MED17_chr11_93779282_93819963	0/0	t0014	3132	2	2	0	0	0	0	copy fasta	MED17	chr11	93779282	93819963
MED17_chr11_93779282_93819963	0/0	t0015	3132	1	0	0	1	0	0	copy fasta	MED17	chr11	93779282	93819963
MED17_chr11_93779282_93819963	0/0	t0016	3131	1	0	0	0	0	1	copy fasta	MED17	chr11	93779282	93819963
MED17_chr11_93779282_93819963	0/0	t0017	3159	1	0	0	1	0	0	copy fasta	MED17	chr11	93779282	93819963
MED17_chr11_93779282_93819963	0/0	t0018	3132	1	1	0	0	0	0	copy fasta	MED17	chr11	93779282	93819963
MED17_chr11_93779282_93819963	0/0	t0019	3132	1	0	1	0	0	0	copy fasta	MED17	chr11	93779282	93819963
MED17_chr11_93779282_93819963	0/0	t0020	3132	1	0	0	1	0	0	copy fasta	MED17	chr11	93779282	93819963
MED17_chr11_93779282_93819963	0/0	t0021	3132	1	1	0	0	0	0	copy fasta	MED17	chr11	93779282	93819963
MED17_chr11_93779282_93819963	0/0	t0022	3132	1	1	0	0	0	0	copy fasta	MED17	chr11	93779282	93819963
MED17_chr11_93779282_93819963	0/0	t0023	3132	1	0	1	0	0	0	copy fasta	MED17	chr11	93779282	93819963
MED17_chr11_93779282_93819963	0/0	t0024	3132	1	0	0	1	0	0	copy fasta	MED17	chr11	93779282	93819963
MED17_chr11_93779282_93819963	0/0	t0025	3132	1	1	0	0	0	0	copy fasta	MED17	chr11	93779282	93819963
MED17_chr11_93779282_93819963	0/0	t0026	3132	1	0	1	0	0	0	copy fasta	MED17	chr11	93779282	93819963
MED17_chr11_93779282_93819963	0/0	t0027	3133	1	0	0	1	0	0	copy fasta	MED17	chr11	93779282	93819963
MED17_chr11_93779282_93819963	0/0	t0028	3132	1	0	0	1	0	0	copy fasta	MED17	chr11	93779282	93819963
MED17_chr11_93779282_93819963	0/0	t0029	3132	1	0	0	1	0	0	copy fasta	MED17	chr11	93779282	93819963
MED17_chr11_93779282_93819963	0/0	t0030	3132	1	0	1	0	0	0	copy fasta	MED17	chr11	93779282	93819963
MED17_chr11_93779282_93819963	0/0	t0031	3132	1	1	0	0	0	0	copy fasta	MED17	chr11	93779282	93819963
MED17_chr11_93779282_93819963	0/0	t0032	3132	1	0	0	1	0	0	copy fasta	MED17	chr11	93779282	93819963
MED18_chr1_28324040_28340965	1/1	t0001	1203	354	84	80	126	18	44	copy fasta	MED18	chr1	28324040	28340965
MED18_chr1_28324040_28340965	0/0	t0002	1203	4	4	0	0	0	0	copy fasta	MED18	chr1	28324040	28340965
MED18_chr1_28324040_28340965	0/0	t0003	1203	2	2	0	0	0	0	copy fasta	MED18	chr1	28324040	28340965
MED18_chr1_28324040_28340965	0/0	t0004	1203	1	0	0	1	0	0	copy fasta	MED18	chr1	28324040	28340965