JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MED18_chr1_28324040_28340965	0/0	t0005	1203	1	0	1	0	0	0	copy fasta	MED18	chr1	28324040	28340965
MED18_chr1_28324040_28340965	0/0	t0006	1203	1	0	1	0	0	0	copy fasta	MED18	chr1	28324040	28340965
MED18_chr1_28324040_28340965	0/0	t0007	1203	1	0	0	1	0	0	copy fasta	MED18	chr1	28324040	28340965
MED19_chr11_57698710_57717215	1/1	t0001	365	368	87	74	144	16	45	copy fasta	MED19	chr11	57698710	57717215
MED19_chr11_57698710_57717215	0/0	t0002	364	6	1	0	4	0	1	copy fasta	MED19	chr11	57698710	57717215
MED19_chr11_57698710_57717215	0/0	t0003	365	2	0	2	0	0	0	copy fasta	MED19	chr11	57698710	57717215
MED19_chr11_57698710_57717215	0/0	t0004	365	2	0	2	0	0	0	copy fasta	MED19	chr11	57698710	57717215
MED19_chr11_57698710_57717215	0/0	t0005	365	1	1	0	0	0	0	copy fasta	MED19	chr11	57698710	57717215
MED19_chr11_57698710_57717215	0/0	t0006	365	1	1	0	0	0	0	copy fasta	MED19	chr11	57698710	57717215
MED1_chr17_39399285_39456263	1/1	t0001	3392	136	26	31	52	7	18	copy fasta	MED1	chr17	39399285	39456263
MED1_chr17_39399285_39456263	0/0	t0002	3392	112	46	17	40	5	4	copy fasta	MED1	chr17	39399285	39456263
MED1_chr17_39399285_39456263	0/0	t0003	3392	5	0	1	0	1	3	copy fasta	MED1	chr17	39399285	39456263
MED1_chr17_39399285_39456263	0/0	t0004	3391	5	5	0	0	0	0	copy fasta	MED1	chr17	39399285	39456263
MED1_chr17_39399285_39456263	0/0	t0005	3392	4	0	0	4	0	0	copy fasta	MED1	chr17	39399285	39456263
MED1_chr17_39399285_39456263	0/0	t0006	3393	3	3	0	0	0	0	copy fasta	MED1	chr17	39399285	39456263
MED1_chr17_39399285_39456263	0/0	t0007	3393	2	0	0	2	0	0	copy fasta	MED1	chr17	39399285	39456263
MED1_chr17_39399285_39456263	0/0	t0008	3392	2	0	0	0	1	1	copy fasta	MED1	chr17	39399285	39456263
MED1_chr17_39399285_39456263	0/0	t0009	3392	1	0	1	0	0	0	copy fasta	MED1	chr17	39399285	39456263
MED1_chr17_39399285_39456263	0/0	t0010	3393	1	0	1	0	0	0	copy fasta	MED1	chr17	39399285	39456263
MED1_chr17_39399285_39456263	0/0	t0011	3392	1	0	0	1	0	0	copy fasta	MED1	chr17	39399285	39456263
MED1_chr17_39399285_39456263	0/0	t0012	3392	1	0	0	1	0	0	copy fasta	MED1	chr17	39399285	39456263
MED1_chr17_39399285_39456263	0/0	t0013	3392	1	1	0	0	0	0	copy fasta	MED1	chr17	39399285	39456263
MED1_chr17_39399285_39456263	0/0	t0014	3392	1	0	1	0	0	0	copy fasta	MED1	chr17	39399285	39456263
MED1_chr17_39399285_39456263	0/0	t0015	3392	1	1	0	0	0	0	copy fasta	MED1	chr17	39399285	39456263
MED1_chr17_39399285_39456263	0/0	t0016	3392	1	0	0	1	0	0	copy fasta	MED1	chr17	39399285	39456263
MED1_chr17_39399285_39456263	0/0	t0017	3392	1	0	0	0	0	1	copy fasta	MED1	chr17	39399285	39456263
MED1_chr17_39399285_39456263	0/0	t0018	3391	1	0	0	0	0	1	copy fasta	MED1	chr17	39399285	39456263
MED1_chr17_39399285_39456263	0/0	t0019	3392	1	0	0	1	0	0	copy fasta	MED1	chr17	39399285	39456263
MED20_chr6_41900354_41926139	0/0	t0001	1840	183	45	34	84	2	18	copy fasta	MED20	chr6	41900354	41926139
MED20_chr6_41900354_41926139	0/0	t0002	1840	147	37	22	69	8	11	copy fasta	MED20	chr6	41900354	41926139
MED20_chr6_41900354_41926139	1/1	t0003	1840	80	2	18	39	3	16	copy fasta	MED20	chr6	41900354	41926139
MED20_chr6_41900354_41926139	0/0	t0004	1840	6	0	0	6	0	0	copy fasta	MED20	chr6	41900354	41926139
MED20_chr6_41900354_41926139	0/0	t0005	1840	6	0	0	6	0	0	copy fasta	MED20	chr6	41900354	41926139
MED20_chr6_41900354_41926139	0/0	t0006	1840	5	5	0	0	0	0	copy fasta	MED20	chr6	41900354	41926139
MED20_chr6_41900354_41926139	0/0	t0007	1840	4	4	0	0	0	0	copy fasta	MED20	chr6	41900354	41926139
MED20_chr6_41900354_41926139	0/0	t0008	1840	3	3	0	0	0	0	copy fasta	MED20	chr6	41900354	41926139
MED20_chr6_41900354_41926139	0/0	t0009	1840	2	0	1	0	0	1	copy fasta	MED20	chr6	41900354	41926139
MED20_chr6_41900354_41926139	0/0	t0010	1840	2	0	0	2	0	0	copy fasta	MED20	chr6	41900354	41926139
MED20_chr6_41900354_41926139	0/0	t0011	1840	1	1	0	0	0	0	copy fasta	MED20	chr6	41900354	41926139
MED20_chr6_41900354_41926139	0/0	t0012	1840	1	0	0	0	0	1	copy fasta	MED20	chr6	41900354	41926139
MED20_chr6_41900354_41926139	0/0	t0013	1840	1	0	0	0	1	0	copy fasta	MED20	chr6	41900354	41926139
MED20_chr6_41900354_41926139	0/0	t0014	1840	1	0	0	0	0	1	copy fasta	MED20	chr6	41900354	41926139
MED20_chr6_41900354_41926139	0/0	t0015	1840	1	1	0	0	0	0	copy fasta	MED20	chr6	41900354	41926139
MED20_chr6_41900354_41926139	0/0	t0016	1840	1	0	1	0	0	0	copy fasta	MED20	chr6	41900354	41926139
MED21_chr12_27017558_27035673	0/1	t0001	2235	157	18	30	85	2	21	copy fasta	MED21	chr12	27017558	27035673
MED21_chr12_27017558_27035673	0/0	t0002	2235	88	19	5	56	2	6	copy fasta	MED21	chr12	27017558	27035673
MED21_chr12_27017558_27035673	0/0	t0003	2235	65	19	8	30	3	5	copy fasta	MED21	chr12	27017558	27035673
MED21_chr12_27017558_27035673	0/0	t0004	2235	30	4	12	2	5	7	copy fasta	MED21	chr12	27017558	27035673
MED21_chr12_27017558_27035673	1/0	t0005	2235	28	17	8	0	0	2	copy fasta	MED21	chr12	27017558	27035673
MED21_chr12_27017558_27035673	0/0	t0006	2237	14	0	4	10	0	0	copy fasta	MED21	chr12	27017558	27035673