JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MED21_chr12_27017558_27035673	0/0	t0007	2237	12	0	11	0	0	1	copy fasta	MED21	chr12	27017558	27035673
MED21_chr12_27017558_27035673	0/0	t0008	2233	6	6	0	0	0	0	copy fasta	MED21	chr12	27017558	27035673
MED21_chr12_27017558_27035673	0/0	t0009	2235	4	0	2	0	2	0	copy fasta	MED21	chr12	27017558	27035673
MED21_chr12_27017558_27035673	0/0	t0010	2232	4	4	0	0	0	0	copy fasta	MED21	chr12	27017558	27035673
MED21_chr12_27017558_27035673	0/0	t0011	2235	4	0	0	4	0	0	copy fasta	MED21	chr12	27017558	27035673
MED21_chr12_27017558_27035673	0/0	t0012	2235	2	0	0	2	0	0	copy fasta	MED21	chr12	27017558	27035673
MED21_chr12_27017558_27035673	0/0	t0013	2235	2	2	0	0	0	0	copy fasta	MED21	chr12	27017558	27035673
MED21_chr12_27017558_27035673	0/0	t0014	2235	1	0	0	1	0	0	copy fasta	MED21	chr12	27017558	27035673
MED21_chr12_27017558_27035673	0/0	t0015	2235	1	1	0	0	0	0	copy fasta	MED21	chr12	27017558	27035673
MED21_chr12_27017558_27035673	0/0	t0016	2235	1	0	0	1	0	0	copy fasta	MED21	chr12	27017558	27035673
MED21_chr12_27017558_27035673	0/0	t0017	2235	1	1	0	0	0	0	copy fasta	MED21	chr12	27017558	27035673
MED21_chr12_27017558_27035673	0/0	t0018	2235	1	1	0	0	0	0	copy fasta	MED21	chr12	27017558	27035673
MED21_chr12_27017558_27035673	0/0	t0019	2233	1	1	0	0	0	0	copy fasta	MED21	chr12	27017558	27035673
MED21_chr12_27017558_27035673	0/0	t0020	2233	1	1	0	0	0	0	copy fasta	MED21	chr12	27017558	27035673
MED21_chr12_27017558_27035673	0/0	t0021	2235	1	0	0	1	0	0	copy fasta	MED21	chr12	27017558	27035673
MED21_chr12_27017558_27035673	0/0	t0022	2235	1	1	0	0	0	0	copy fasta	MED21	chr12	27017558	27035673
MED21_chr12_27017558_27035673	0/0	t0023	2235	1	1	0	0	0	0	copy fasta	MED21	chr12	27017558	27035673
MED22_chr9_133333312_133353131	1/0	t0001	3442	204	38	29	101	13	22	copy fasta	MED22	chr9	133333312	133353131
MED22_chr9_133333312_133353131	0/1	t0002	3455	100	3	28	45	2	21	copy fasta	MED22	chr9	133333312	133353131
MED22_chr9_133333312_133353131	0/0	t0003	3455	14	9	2	3	0	0	copy fasta	MED22	chr9	133333312	133353131
MED22_chr9_133333312_133353131	0/0	t0004	3455	11	6	4	0	1	0	copy fasta	MED22	chr9	133333312	133353131
MED22_chr9_133333312_133353131	0/0	t0005	3442	8	0	0	8	0	0	copy fasta	MED22	chr9	133333312	133353131
MED22_chr9_133333312_133353131	0/0	t0006	3442	7	0	0	7	0	0	copy fasta	MED22	chr9	133333312	133353131
MED22_chr9_133333312_133353131	0/0	t0007	3455	7	7	0	0	0	0	copy fasta	MED22	chr9	133333312	133353131
MED22_chr9_133333312_133353131	0/0	t0008	3455	6	6	0	0	0	0	copy fasta	MED22	chr9	133333312	133353131
MED22_chr9_133333312_133353131	0/0	t0009	3442	6	0	2	1	2	1	copy fasta	MED22	chr9	133333312	133353131
MED22_chr9_133333312_133353131	0/0	t0010	3442	6	0	2	4	0	0	copy fasta	MED22	chr9	133333312	133353131
MED22_chr9_133333312_133353131	0/0	t0011	3455	6	6	0	0	0	0	copy fasta	MED22	chr9	133333312	133353131
MED22_chr9_133333312_133353131	0/0	t0012	3438	4	0	4	0	0	0	copy fasta	MED22	chr9	133333312	133353131
MED22_chr9_133333312_133353131	0/0	t0013	3455	3	3	0	0	0	0	copy fasta	MED22	chr9	133333312	133353131
MED22_chr9_133333312_133353131	0/0	t0014	3455	3	3	0	0	0	0	copy fasta	MED22	chr9	133333312	133353131
MED22_chr9_133333312_133353131	0/0	t0015	3455	2	1	1	0	0	0	copy fasta	MED22	chr9	133333312	133353131
MED22_chr9_133333312_133353131	0/0	t0016	3455	2	2	0	0	0	0	copy fasta	MED22	chr9	133333312	133353131
MED22_chr9_133333312_133353131	0/0	t0017	3455	2	2	0	0	0	0	copy fasta	MED22	chr9	133333312	133353131
MED22_chr9_133333312_133353131	0/0	t0018	3442	2	0	0	2	0	0	copy fasta	MED22	chr9	133333312	133353131
MED22_chr9_133333312_133353131	0/0	t0019	3442	2	0	0	2	0	0	copy fasta	MED22	chr9	133333312	133353131
MED22_chr9_133333312_133353131	0/0	t0020	3442	2	2	0	0	0	0	copy fasta	MED22	chr9	133333312	133353131
MED22_chr9_133333312_133353131	0/0	t0021	3442	2	0	0	2	0	0	copy fasta	MED22	chr9	133333312	133353131
MED22_chr9_133333312_133353131	0/0	t0022	3442	2	1	1	0	0	0	copy fasta	MED22	chr9	133333312	133353131
MED22_chr9_133333312_133353131	0/0	t0023	3455	1	1	0	0	0	0	copy fasta	MED22	chr9	133333312	133353131
MED22_chr9_133333312_133353131	0/0	t0024	3455	1	1	0	0	0	0	copy fasta	MED22	chr9	133333312	133353131
MED22_chr9_133333312_133353131	0/0	t0025	3455	1	1	0	0	0	0	copy fasta	MED22	chr9	133333312	133353131
MED22_chr9_133333312_133353131	0/0	t0026	3455	1	1	0	0	0	0	copy fasta	MED22	chr9	133333312	133353131
MED22_chr9_133333312_133353131	0/0	t0027	3438	1	0	1	0	0	0	copy fasta	MED22	chr9	133333312	133353131
MED22_chr9_133333312_133353131	0/0	t0028	3455	1	1	0	0	0	0	copy fasta	MED22	chr9	133333312	133353131
MED22_chr9_133333312_133353131	0/0	t0029	3442	1	1	0	0	0	0	copy fasta	MED22	chr9	133333312	133353131
MED22_chr9_133333312_133353131	0/0	t0030	3442	1	0	0	1	0	0	copy fasta	MED22	chr9	133333312	133353131
MED22_chr9_133333312_133353131	0/0	t0031	3442	1	0	0	1	0	0	copy fasta	MED22	chr9	133333312	133353131
MED22_chr9_133333312_133353131	0/0	t0032	3455	1	0	0	0	0	1	copy fasta	MED22	chr9	133333312	133353131
MED22_chr9_133333312_133353131	0/0	t0033	3442	1	0	0	1	0	0	copy fasta	MED22	chr9	133333312	133353131