JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MED22_chr9_133333312_133353131	0/0	t0034	3442	1	0	0	0	0	1	copy fasta	MED22	chr9	133333312	133353131
MED22_chr9_133333312_133353131	0/0	t0035	3442	1	0	0	1	0	0	copy fasta	MED22	chr9	133333312	133353131
MED22_chr9_133333312_133353131	0/0	t0036	3442	1	0	0	1	0	0	copy fasta	MED22	chr9	133333312	133353131
MED22_chr9_133333312_133353131	0/0	t0037	3442	1	0	0	1	0	0	copy fasta	MED22	chr9	133333312	133353131
MED22_chr9_133333312_133353131	0/0	t0038	3442	1	0	0	1	0	0	copy fasta	MED22	chr9	133333312	133353131
MED22_chr9_133333312_133353131	0/0	t0039	3442	1	0	0	1	0	0	copy fasta	MED22	chr9	133333312	133353131
MED22_chr9_133333312_133353131	0/0	t0040	3454	1	0	0	1	0	0	copy fasta	MED22	chr9	133333312	133353131
MED22_chr9_133333312_133353131	0/0	t0041	3455	1	0	1	0	0	0	copy fasta	MED22	chr9	133333312	133353131
MED22_chr9_133333312_133353131	0/0	t0042	3455	1	0	0	1	0	0	copy fasta	MED22	chr9	133333312	133353131
MED22_chr9_133333312_133353131	0/0	t0043	3455	1	1	0	0	0	0	copy fasta	MED22	chr9	133333312	133353131
MED22_chr9_133333312_133353131	0/0	t0044	3442	1	0	0	1	0	0	copy fasta	MED22	chr9	133333312	133353131
MED22_chr9_133333312_133353131	0/0	t0045	3455	1	0	1	0	0	0	copy fasta	MED22	chr9	133333312	133353131
MED23_chr6_131581732_131633242	1/1	t0001	1141	292	80	49	123	12	26	copy fasta	MED23	chr6	131581732	131633242
MED23_chr6_131581732_131633242	0/0	t0002	1141	8	4	1	0	0	3	copy fasta	MED23	chr6	131581732	131633242
MED23_chr6_131581732_131633242	0/0	t0003	1141	6	6	0	0	0	0	copy fasta	MED23	chr6	131581732	131633242
MED23_chr6_131581732_131633242	0/0	t0004	1141	5	0	0	5	0	0	copy fasta	MED23	chr6	131581732	131633242
MED23_chr6_131581732_131633242	0/0	t0005	1141	4	0	0	4	0	0	copy fasta	MED23	chr6	131581732	131633242
MED23_chr6_131581732_131633242	0/0	t0006	1141	2	0	0	2	0	0	copy fasta	MED23	chr6	131581732	131633242
MED23_chr6_131581732_131633242	0/0	t0007	1141	1	0	0	1	0	0	copy fasta	MED23	chr6	131581732	131633242
MED23_chr6_131581732_131633242	0/0	t0008	1141	1	0	0	0	0	1	copy fasta	MED23	chr6	131581732	131633242
MED23_chr6_131581732_131633242	0/0	t0009	1141	1	0	0	1	0	0	copy fasta	MED23	chr6	131581732	131633242
MED24_chr17_40014104_40059408	0/0	t0001	517	104	5	24	58	4	13	copy fasta	MED24	chr17	40014104	40059408
MED24_chr17_40014104_40059408	1/0	t0002	511	94	28	9	41	4	11	copy fasta	MED24	chr17	40014104	40059408
MED24_chr17_40014104_40059408	0/1	t0003	519	79	8	27	27	5	11	copy fasta	MED24	chr17	40014104	40059408
MED24_chr17_40014104_40059408	0/0	t0004	521	28	1	3	24	0	0	copy fasta	MED24	chr17	40014104	40059408
MED24_chr17_40014104_40059408	0/0	t0005	515	22	5	3	13	1	0	copy fasta	MED24	chr17	40014104	40059408
MED24_chr17_40014104_40059408	0/0	t0006	517	14	8	0	4	1	1	copy fasta	MED24	chr17	40014104	40059408
MED24_chr17_40014104_40059408	0/0	t0007	507	9	9	0	0	0	0	copy fasta	MED24	chr17	40014104	40059408
MED24_chr17_40014104_40059408	0/0	t0008	519	8	2	1	0	0	5	copy fasta	MED24	chr17	40014104	40059408
MED24_chr17_40014104_40059408	0/0	t0009	515	6	6	0	0	0	0	copy fasta	MED24	chr17	40014104	40059408
MED24_chr17_40014104_40059408	0/0	t0010	513	6	6	0	0	0	0	copy fasta	MED24	chr17	40014104	40059408
MED24_chr17_40014104_40059408	0/0	t0011	513	4	4	0	0	0	0	copy fasta	MED24	chr17	40014104	40059408
MED24_chr17_40014104_40059408	0/0	t0012	505	4	0	0	4	0	0	copy fasta	MED24	chr17	40014104	40059408
MED24_chr17_40014104_40059408	0/0	t0013	509	4	4	0	0	0	0	copy fasta	MED24	chr17	40014104	40059408
MED24_chr17_40014104_40059408	0/0	t0014	517	4	0	0	4	0	0	copy fasta	MED24	chr17	40014104	40059408
MED24_chr17_40014104_40059408	0/0	t0015	513	2	0	2	0	0	0	copy fasta	MED24	chr17	40014104	40059408
MED24_chr17_40014104_40059408	0/0	t0016	511	2	0	0	2	0	0	copy fasta	MED24	chr17	40014104	40059408
MED24_chr17_40014104_40059408	0/0	t0017	511	2	1	0	0	1	0	copy fasta	MED24	chr17	40014104	40059408
MED24_chr17_40014104_40059408	0/0	t0018	523	2	0	0	2	0	0	copy fasta	MED24	chr17	40014104	40059408
MED24_chr17_40014104_40059408	0/0	t0019	507	1	1	0	0	0	0	copy fasta	MED24	chr17	40014104	40059408
MED24_chr17_40014104_40059408	0/0	t0020	515	1	0	1	0	0	0	copy fasta	MED24	chr17	40014104	40059408
MED24_chr17_40014104_40059408	0/0	t0021	511	1	0	0	1	0	0	copy fasta	MED24	chr17	40014104	40059408
MED24_chr17_40014104_40059408	0/0	t0022	519	1	0	0	0	0	1	copy fasta	MED24	chr17	40014104	40059408
MED25_chr19_49813289_49841979	1/1	t0001	89	401	88	80	173	12	46	copy fasta	MED25	chr19	49813289	49841979
MED25_chr19_49813289_49841979	0/0	t0002	89	4	4	0	0	0	0	copy fasta	MED25	chr19	49813289	49841979
MED25_chr19_49813289_49841979	0/0	t0003	89	1	0	0	1	0	0	copy fasta	MED25	chr19	49813289	49841979
MED26_chr19_16569919_16633204	1/1	t0001	1370	249	68	58	77	6	38	copy fasta	MED26	chr19	16569919	16633204
MED26_chr19_16569919_16633204	0/0	t0002	1369	12	8	3	0	0	1	copy fasta	MED26	chr19	16569919	16633204
MED26_chr19_16569919_16633204	0/0	t0003	1369	1	1	0	0	0	0	copy fasta	MED26	chr19	16569919	16633204
MED26_chr19_16569919_16633204	0/0	t0004	1370	1	0	0	1	0	0	copy fasta	MED26	chr19	16569919	16633204