JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MED26_chr19_16569919_16633204	0/0	t0005	1369	1	1	0	0	0	0	copy fasta	MED26	chr19	16569919	16633204
MED26_chr19_16569919_16633204	0/0	t0006	1370	1	1	0	0	0	0	copy fasta	MED26	chr19	16569919	16633204
MED26_chr19_16569919_16633204	0/0	t0007	1370	1	0	1	0	0	0	copy fasta	MED26	chr19	16569919	16633204
MED26_chr19_16569919_16633204	0/0	t0008	1370	1	1	0	0	0	0	copy fasta	MED26	chr19	16569919	16633204
MED26_chr19_16569919_16633204	0/0	t0009	1370	1	0	0	0	0	1	copy fasta	MED26	chr19	16569919	16633204
MED27_chr9_131855112_132084867	1/1	t0001	450	217	80	43	74	4	14	copy fasta	MED27	chr9	131855112	132084867
MED27_chr9_131855112_132084867	0/0	t0002	450	57	14	9	28	0	6	copy fasta	MED27	chr9	131855112	132084867
MED28_chr4_17609641_17639105	0/0	t0001	10289	43	1	15	22	1	4	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/1	t0002	10293	27	3	7	10	2	4	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0003	10291	13	1	4	6	1	1	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0004	10295	10	0	5	3	1	1	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0005	10289	8	0	0	8	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0006	10326	7	0	3	2	1	1	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0007	10294	7	0	1	6	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0008	10289	6	3	1	0	0	2	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0009	10321	5	5	0	0	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0010	10320	5	5	0	0	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0011	10293	5	0	0	4	0	1	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0012	10308	4	2	0	0	2	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0013	10320	4	1	3	0	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0014	10321	4	0	2	1	1	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0015	10285	4	0	3	1	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0016	10297	4	0	0	3	1	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0017	10322	3	3	0	0	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0018	10291	3	0	3	0	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0019	10287	3	0	2	1	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0020	10292	3	3	0	0	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0021	10285	2	2	0	0	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0022	10286	2	2	0	0	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0023	10321	2	2	0	0	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0024	10309	2	2	0	0	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0025	10322	2	0	0	0	0	2	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0026	10323	2	0	2	0	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0027	10323	2	0	2	0	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0028	10299	2	2	0	0	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0029	10320	2	2	0	0	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0030	10300	2	2	0	0	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0031	10290	2	0	0	0	0	2	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0032	10311	2	2	0	0	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0033	10312	2	1	1	0	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0034	10319	2	2	0	0	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0035	10321	2	2	0	0	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0036	10285	2	0	0	0	0	2	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0037	10291	2	2	0	0	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0038	10289	2	0	0	2	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0039	10290	2	0	0	2	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0040	10291	2	0	1	0	0	1	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0041	10293	2	0	1	0	1	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0042	10293	2	0	0	0	0	2	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0043	10291	1	0	0	1	0	0	copy fasta	MED28	chr4	17609641	17639105