JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MED28_chr4_17609641_17639105	0/0	t0044	10286	1	1	0	0	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0045	10285	1	1	0	0	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0046	10286	1	1	0	0	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0047	10285	1	1	0	0	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0048	10350	1	1	0	0	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0049	10304	1	1	0	0	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0050	10301	1	1	0	0	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0051	10295	1	1	0	0	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0052	10323	1	0	1	0	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0053	10326	1	0	1	0	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0054	10304	1	0	1	0	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0055	10316	1	0	0	1	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0056	10326	1	0	0	1	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0057	10327	1	0	0	1	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0058	10323	1	1	0	0	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0059	10323	1	0	0	1	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0060	10327	1	1	0	0	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0061	10320	1	0	0	0	0	1	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0062	10322	1	1	0	0	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0063	10322	1	0	0	0	0	1	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	1/0	t0064	10322	1	0	0	0	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0065	10322	1	0	0	1	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0066	10320	1	1	0	0	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0067	10304	1	1	0	0	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0068	10324	1	0	1	0	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0069	10335	1	1	0	0	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0070	10324	1	0	0	0	0	1	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0071	10324	1	0	0	1	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0072	10322	1	0	0	0	0	1	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0073	10320	1	0	1	0	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0074	10297	1	0	0	0	0	1	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0075	10303	1	0	0	0	0	1	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0076	10305	1	0	0	0	0	1	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0077	10313	1	0	0	1	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0078	10315	1	0	0	0	1	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0079	10324	1	0	0	0	1	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0080	10326	1	1	0	0	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0081	10311	1	0	0	1	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0082	10326	1	0	0	1	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0083	10325	1	0	0	1	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0084	10323	1	1	0	0	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0085	10320	1	1	0	0	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0086	10321	1	1	0	0	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0087	10284	1	0	1	0	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0088	10294	1	1	0	0	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0089	10294	1	1	0	0	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0090	10300	1	1	0	0	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0091	10284	1	1	0	0	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0092	10289	1	1	0	0	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0093	10295	1	1	0	0	0	0	copy fasta	MED28	chr4	17609641	17639105