JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MED28_chr4_17609641_17639105	0/0	t0094	10299	1	1	0	0	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0095	10294	1	1	0	0	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0096	10306	1	1	0	0	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0097	10297	1	1	0	0	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0098	10288	1	0	0	1	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0099	10290	1	0	0	1	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0100	10290	1	0	0	1	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0101	10288	1	0	0	1	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0102	10291	1	0	0	1	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0103	10320	1	1	0	0	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0104	10322	1	1	0	0	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0105	10321	1	1	0	0	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0106	10289	1	0	0	1	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0107	10295	1	0	0	1	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0108	10299	1	1	0	0	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0109	10290	1	0	0	1	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0110	10294	1	0	0	1	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0111	10296	1	1	0	0	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0112	10297	1	1	0	0	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0113	10301	1	1	0	0	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0114	10319	1	1	0	0	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0115	10321	1	1	0	0	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0116	10293	1	0	1	0	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0117	10288	1	0	0	1	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0118	10291	1	0	1	0	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0119	10277	1	0	1	0	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0120	10285	1	0	0	0	0	1	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0121	10286	1	0	0	0	1	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0122	10285	1	0	1	0	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0123	10287	1	0	1	0	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0124	10288	1	0	0	1	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0125	10289	1	0	0	1	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0126	10289	1	0	1	0	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0127	10289	1	0	1	0	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0128	10288	1	0	0	0	0	1	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0129	10289	1	0	0	1	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0130	10291	1	0	0	1	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0131	10291	1	0	0	1	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0132	10295	1	1	0	0	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0133	10295	1	0	0	0	0	1	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0134	10295	1	0	0	1	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0135	10295	1	0	0	0	0	1	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0136	10297	1	0	0	1	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0137	10299	1	1	0	0	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0138	10301	1	0	0	1	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0139	10298	1	1	0	0	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0140	10296	1	0	0	1	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0141	10289	1	0	0	1	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0142	10295	1	0	0	1	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0143	10291	1	0	0	0	0	1	copy fasta	MED28	chr4	17609641	17639105