JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MED28_chr4_17609641_17639105	0/0	t0144	10289	1	0	0	1	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0145	10290	1	0	0	1	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0146	10283	1	1	0	0	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0147	10283	1	0	1	0	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0148	10285	1	1	0	0	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0149	10278	1	1	0	0	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0150	10300	1	1	0	0	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0151	10295	1	0	0	1	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0152	10296	1	0	0	0	0	1	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0153	10335	1	0	0	0	0	1	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0154	10324	1	0	0	0	0	1	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0155	10318	1	1	0	0	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0156	10322	1	1	0	0	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0157	10320	1	1	0	0	0	0	copy fasta	MED28	chr4	17609641	17639105
MED28_chr4_17609641_17639105	0/0	t0158	10326	1	1	0	0	0	0	copy fasta	MED28	chr4	17609641	17639105
MED29_chr19_39386378_39405641	0/0	t0001	2988	154	11	36	83	8	16	copy fasta	MED29	chr19	39386378	39405641
MED29_chr19_39386378_39405641	0/0	t0002	2988	57	21	11	11	3	11	copy fasta	MED29	chr19	39386378	39405641
MED29_chr19_39386378_39405641	0/0	t0003	2988	41	4	13	11	3	10	copy fasta	MED29	chr19	39386378	39405641
MED29_chr19_39386378_39405641	0/0	t0004	2988	34	7	5	21	0	1	copy fasta	MED29	chr19	39386378	39405641
MED29_chr19_39386378_39405641	0/0	t0005	2988	20	1	0	19	0	0	copy fasta	MED29	chr19	39386378	39405641
MED29_chr19_39386378_39405641	0/0	t0006	2988	17	16	1	0	0	0	copy fasta	MED29	chr19	39386378	39405641
MED29_chr19_39386378_39405641	0/1	t0007	2988	14	3	2	8	0	0	copy fasta	MED29	chr19	39386378	39405641
MED29_chr19_39386378_39405641	0/0	t0008	2988	6	6	0	0	0	0	copy fasta	MED29	chr19	39386378	39405641
MED29_chr19_39386378_39405641	0/0	t0009	2988	6	0	4	0	2	0	copy fasta	MED29	chr19	39386378	39405641
MED29_chr19_39386378_39405641	0/0	t0010	2988	4	4	0	0	0	0	copy fasta	MED29	chr19	39386378	39405641
MED29_chr19_39386378_39405641	0/0	t0011	2988	3	0	0	3	0	0	copy fasta	MED29	chr19	39386378	39405641
MED29_chr19_39386378_39405641	0/0	t0012	2988	2	0	2	0	0	0	copy fasta	MED29	chr19	39386378	39405641
MED29_chr19_39386378_39405641	0/0	t0013	2988	2	1	1	0	0	0	copy fasta	MED29	chr19	39386378	39405641
MED29_chr19_39386378_39405641	0/0	t0014	2988	2	2	0	0	0	0	copy fasta	MED29	chr19	39386378	39405641
MED29_chr19_39386378_39405641	0/0	t0015	2988	1	1	0	0	0	0	copy fasta	MED29	chr19	39386378	39405641
MED29_chr19_39386378_39405641	0/0	t0016	2988	1	1	0	0	0	0	copy fasta	MED29	chr19	39386378	39405641
MED29_chr19_39386378_39405641	0/0	t0017	2988	1	1	0	0	0	0	copy fasta	MED29	chr19	39386378	39405641
MED29_chr19_39386378_39405641	0/0	t0018	2988	1	1	0	0	0	0	copy fasta	MED29	chr19	39386378	39405641
MED29_chr19_39386378_39405641	0/0	t0019	2988	1	1	0	0	0	0	copy fasta	MED29	chr19	39386378	39405641
MED29_chr19_39386378_39405641	0/0	t0020	2988	1	1	0	0	0	0	copy fasta	MED29	chr19	39386378	39405641
MED29_chr19_39386378_39405641	0/0	t0021	2988	1	1	0	0	0	0	copy fasta	MED29	chr19	39386378	39405641
MED29_chr19_39386378_39405641	0/0	t0022	2988	1	0	0	1	0	0	copy fasta	MED29	chr19	39386378	39405641
MED29_chr19_39386378_39405641	0/0	t0023	2986	1	0	0	1	0	0	copy fasta	MED29	chr19	39386378	39405641
MED29_chr19_39386378_39405641	0/0	t0024	2988	1	0	0	1	0	0	copy fasta	MED29	chr19	39386378	39405641
MED29_chr19_39386378_39405641	0/0	t0025	2988	1	0	0	1	0	0	copy fasta	MED29	chr19	39386378	39405641
MED29_chr19_39386378_39405641	1/0	t0026	2988	1	0	0	0	0	0	copy fasta	MED29	chr19	39386378	39405641
MED29_chr19_39386378_39405641	0/0	t0027	2988	1	1	0	0	0	0	copy fasta	MED29	chr19	39386378	39405641
MED29_chr19_39386378_39405641	0/0	t0028	2988	1	0	0	1	0	0	copy fasta	MED29	chr19	39386378	39405641
MED29_chr19_39386378_39405641	0/0	t0029	2988	1	1	0	0	0	0	copy fasta	MED29	chr19	39386378	39405641
MED29_chr19_39386378_39405641	0/0	t0030	2988	1	1	0	0	0	0	copy fasta	MED29	chr19	39386378	39405641
MED29_chr19_39386378_39405641	0/0	t0031	2988	1	1	0	0	0	0	copy fasta	MED29	chr19	39386378	39405641
MED29_chr19_39386378_39405641	0/0	t0032	2988	1	1	0	0	0	0	copy fasta	MED29	chr19	39386378	39405641
MED29_chr19_39386378_39405641	0/0	t0033	2988	1	1	0	0	0	0	copy fasta	MED29	chr19	39386378	39405641
MED29_chr19_39386378_39405641	0/0	t0034	2988	1	0	0	1	0	0	copy fasta	MED29	chr19	39386378	39405641
MED29_chr19_39386378_39405641	0/0	t0035	2988	1	0	1	0	0	0	copy fasta	MED29	chr19	39386378	39405641