JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MED29_chr19_39386378_39405641	0/0	t0036	2988	1	1	0	0	0	0	copy fasta	MED29	chr19	39386378	39405641
MED29_chr19_39386378_39405641	0/0	t0037	2988	1	1	0	0	0	0	copy fasta	MED29	chr19	39386378	39405641
MED29_chr19_39386378_39405641	0/0	t0038	2988	1	1	0	0	0	0	copy fasta	MED29	chr19	39386378	39405641
MED29_chr19_39386378_39405641	0/0	t0039	2988	1	1	0	0	0	0	copy fasta	MED29	chr19	39386378	39405641
MED29_chr19_39386378_39405641	0/0	t0040	2988	1	1	0	0	0	0	copy fasta	MED29	chr19	39386378	39405641
MED30_chr8_117515713_117545262	1/0	t0001	449	160	26	32	82	4	15	copy fasta	MED30	chr8	117515713	117545262
MED30_chr8_117515713_117545262	0/1	t0002	449	85	27	13	33	2	9	copy fasta	MED30	chr8	117515713	117545262
MED30_chr8_117515713_117545262	0/0	t0003	448	43	5	9	22	3	4	copy fasta	MED30	chr8	117515713	117545262
MED30_chr8_117515713_117545262	0/0	t0004	448	39	11	16	7	5	0	copy fasta	MED30	chr8	117515713	117545262
MED30_chr8_117515713_117545262	0/0	t0005	449	14	12	2	0	0	0	copy fasta	MED30	chr8	117515713	117545262
MED30_chr8_117515713_117545262	0/0	t0006	453	4	4	0	0	0	0	copy fasta	MED30	chr8	117515713	117545262
MED30_chr8_117515713_117545262	0/0	t0007	449	1	0	0	1	0	0	copy fasta	MED30	chr8	117515713	117545262
MED30_chr8_117515713_117545262	0/0	t0008	449	1	0	0	1	0	0	copy fasta	MED30	chr8	117515713	117545262
MED30_chr8_117515713_117545262	0/0	t0009	449	1	1	0	0	0	0	copy fasta	MED30	chr8	117515713	117545262
MED31_chr17_6638311_6656605	0/0	t0001	1234	271	74	45	118	5	29	copy fasta	MED31	chr17	6638311	6656605
MED31_chr17_6638311_6656605	1/1	t0002	1234	122	2	22	75	5	16	copy fasta	MED31	chr17	6638311	6656605
MED31_chr17_6638311_6656605	0/0	t0003	1234	10	1	2	1	5	1	copy fasta	MED31	chr17	6638311	6656605
MED31_chr17_6638311_6656605	0/0	t0004	1234	10	9	1	0	0	0	copy fasta	MED31	chr17	6638311	6656605
MED31_chr17_6638311_6656605	0/0	t0005	1234	6	6	0	0	0	0	copy fasta	MED31	chr17	6638311	6656605
MED31_chr17_6638311_6656605	0/0	t0006	1234	3	3	0	0	0	0	copy fasta	MED31	chr17	6638311	6656605
MED31_chr17_6638311_6656605	0/0	t0007	1234	3	0	2	0	1	0	copy fasta	MED31	chr17	6638311	6656605
MED31_chr17_6638311_6656605	0/0	t0008	1234	1	0	0	1	0	0	copy fasta	MED31	chr17	6638311	6656605
MED31_chr17_6638311_6656605	0/0	t0009	1234	1	1	0	0	0	0	copy fasta	MED31	chr17	6638311	6656605
MED31_chr17_6638311_6656605	0/0	t0010	1234	1	0	0	1	0	0	copy fasta	MED31	chr17	6638311	6656605
MED4_chr13_48070724_48100104	1/1	t0001	1442	316	62	51	164	15	22	copy fasta	MED4	chr13	48070724	48100104
MED4_chr13_48070724_48100104	0/0	t0002	1441	30	12	3	15	0	0	copy fasta	MED4	chr13	48070724	48100104
MED4_chr13_48070724_48100104	0/0	t0003	1442	20	0	9	2	0	9	copy fasta	MED4	chr13	48070724	48100104
MED4_chr13_48070724_48100104	0/0	t0004	1438	16	0	3	2	1	10	copy fasta	MED4	chr13	48070724	48100104
MED4_chr13_48070724_48100104	0/0	t0005	1443	4	3	0	1	0	0	copy fasta	MED4	chr13	48070724	48100104
MED4_chr13_48070724_48100104	0/0	t0006	1438	3	3	0	0	0	0	copy fasta	MED4	chr13	48070724	48100104
MED4_chr13_48070724_48100104	0/0	t0007	1442	3	3	0	0	0	0	copy fasta	MED4	chr13	48070724	48100104
MED4_chr13_48070724_48100104	0/0	t0008	1442	2	0	0	2	0	0	copy fasta	MED4	chr13	48070724	48100104
MED4_chr13_48070724_48100104	0/0	t0009	1442	2	1	1	0	0	0	copy fasta	MED4	chr13	48070724	48100104
MED4_chr13_48070724_48100104	0/0	t0010	1442	2	0	1	0	0	1	copy fasta	MED4	chr13	48070724	48100104
MED4_chr13_48070724_48100104	0/0	t0011	1442	2	0	0	0	1	1	copy fasta	MED4	chr13	48070724	48100104
MED4_chr13_48070724_48100104	0/0	t0012	1441	1	0	1	0	0	0	copy fasta	MED4	chr13	48070724	48100104
MED4_chr13_48070724_48100104	0/0	t0013	1442	1	1	0	0	0	0	copy fasta	MED4	chr13	48070724	48100104
MED4_chr13_48070724_48100104	0/0	t0014	1442	1	0	0	0	0	1	copy fasta	MED4	chr13	48070724	48100104
MED4_chr13_48070724_48100104	0/0	t0015	1443	1	1	0	0	0	0	copy fasta	MED4	chr13	48070724	48100104
MED4_chr13_48070724_48100104	0/0	t0016	1442	1	0	1	0	0	0	copy fasta	MED4	chr13	48070724	48100104
MED4_chr13_48070724_48100104	0/0	t0017	1442	1	0	0	1	0	0	copy fasta	MED4	chr13	48070724	48100104
MED4_chr13_48070724_48100104	0/0	t0018	1442	1	0	0	1	0	0	copy fasta	MED4	chr13	48070724	48100104
MED4_chr13_48070724_48100104	0/0	t0019	1442	1	0	0	0	1	0	copy fasta	MED4	chr13	48070724	48100104
MED6_chr14_70578221_70605655	1/1	t0001	1611	204	20	42	105	7	28	copy fasta	MED6	chr14	70578221	70605655
MED6_chr14_70578221_70605655	0/0	t0002	1611	77	8	8	53	1	7	copy fasta	MED6	chr14	70578221	70605655
MED6_chr14_70578221_70605655	0/0	t0003	1611	30	15	3	12	0	0	copy fasta	MED6	chr14	70578221	70605655
MED6_chr14_70578221_70605655	0/0	t0004	1611	27	16	4	6	0	1	copy fasta	MED6	chr14	70578221	70605655
MED6_chr14_70578221_70605655	0/0	t0005	1611	15	0	0	15	0	0	copy fasta	MED6	chr14	70578221	70605655
MED6_chr14_70578221_70605655	0/0	t0006	1611	15	11	4	0	0	0	copy fasta	MED6	chr14	70578221	70605655
MED6_chr14_70578221_70605655	0/0	t0007	1611	10	1	3	3	1	2	copy fasta	MED6	chr14	70578221	70605655