JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MED6_chr14_70578221_70605655	0/0	t0008	1611	6	6	0	0	0	0	copy fasta	MED6	chr14	70578221	70605655
MED6_chr14_70578221_70605655	0/0	t0009	1611	5	0	0	0	3	2	copy fasta	MED6	chr14	70578221	70605655
MED6_chr14_70578221_70605655	0/0	t0010	1611	4	4	0	0	0	0	copy fasta	MED6	chr14	70578221	70605655
MED6_chr14_70578221_70605655	0/0	t0011	1611	3	0	0	0	0	3	copy fasta	MED6	chr14	70578221	70605655
MED6_chr14_70578221_70605655	0/0	t0012	1611	2	2	0	0	0	0	copy fasta	MED6	chr14	70578221	70605655
MED6_chr14_70578221_70605655	0/0	t0013	1611	2	0	0	0	0	2	copy fasta	MED6	chr14	70578221	70605655
MED6_chr14_70578221_70605655	0/0	t0014	1611	2	2	0	0	0	0	copy fasta	MED6	chr14	70578221	70605655
MED6_chr14_70578221_70605655	0/0	t0015	1611	1	0	0	1	0	0	copy fasta	MED6	chr14	70578221	70605655
MED6_chr14_70578221_70605655	0/0	t0016	1611	1	0	0	0	0	1	copy fasta	MED6	chr14	70578221	70605655
MED6_chr14_70578221_70605655	0/0	t0017	1611	1	0	0	1	0	0	copy fasta	MED6	chr14	70578221	70605655
MED6_chr14_70578221_70605655	0/0	t0018	1611	1	1	0	0	0	0	copy fasta	MED6	chr14	70578221	70605655
MED7_chr5_157132424_157147865	1/1	t0001	1370	212	25	49	105	6	25	copy fasta	MED7	chr5	157132424	157147865
MED7_chr5_157132424_157147865	0/0	t0002	1369	60	1	5	42	1	11	copy fasta	MED7	chr5	157132424	157147865
MED7_chr5_157132424_157147865	0/0	t0003	1370	35	12	9	8	4	2	copy fasta	MED7	chr5	157132424	157147865
MED7_chr5_157132424_157147865	0/0	t0004	1369	24	19	2	0	1	2	copy fasta	MED7	chr5	157132424	157147865
MED7_chr5_157132424_157147865	0/0	t0005	1370	14	12	0	1	0	1	copy fasta	MED7	chr5	157132424	157147865
MED7_chr5_157132424_157147865	0/0	t0006	1370	14	13	1	0	0	0	copy fasta	MED7	chr5	157132424	157147865
MED7_chr5_157132424_157147865	0/0	t0007	1371	10	10	0	0	0	0	copy fasta	MED7	chr5	157132424	157147865
MED7_chr5_157132424_157147865	0/0	t0008	1370	5	0	0	4	0	1	copy fasta	MED7	chr5	157132424	157147865
MED7_chr5_157132424_157147865	0/0	t0009	1370	5	2	3	0	0	0	copy fasta	MED7	chr5	157132424	157147865
MED7_chr5_157132424_157147865	0/0	t0010	1369	2	2	0	0	0	0	copy fasta	MED7	chr5	157132424	157147865
MED7_chr5_157132424_157147865	0/0	t0011	1370	1	0	1	0	0	0	copy fasta	MED7	chr5	157132424	157147865
MED7_chr5_157132424_157147865	0/0	t0012	1370	1	0	0	1	0	0	copy fasta	MED7	chr5	157132424	157147865
MED7_chr5_157132424_157147865	0/0	t0013	1370	1	0	0	1	0	0	copy fasta	MED7	chr5	157132424	157147865
MED7_chr5_157132424_157147865	0/0	t0014	1371	1	0	0	1	0	0	copy fasta	MED7	chr5	157132424	157147865
MED7_chr5_157132424_157147865	0/0	t0015	1370	1	0	0	1	0	0	copy fasta	MED7	chr5	157132424	157147865
MED8_chr1_43378917_43394800	1/1	t0001	1162	260	50	32	133	12	31	copy fasta	MED8	chr1	43378917	43394800
MED8_chr1_43378917_43394800	0/0	t0002	1162	77	18	30	22	4	3	copy fasta	MED8	chr1	43378917	43394800
MED8_chr1_43378917_43394800	0/0	t0003	1162	30	25	3	1	0	1	copy fasta	MED8	chr1	43378917	43394800
MED8_chr1_43378917_43394800	0/0	t0004	1162	7	0	5	2	0	0	copy fasta	MED8	chr1	43378917	43394800
MED8_chr1_43378917_43394800	0/0	t0005	1162	2	0	0	0	0	2	copy fasta	MED8	chr1	43378917	43394800
MED8_chr1_43378917_43394800	0/0	t0006	1162	1	0	0	0	0	1	copy fasta	MED8	chr1	43378917	43394800
MED8_chr1_43378917_43394800	0/0	t0007	1162	1	1	0	0	0	0	copy fasta	MED8	chr1	43378917	43394800
MED8_chr1_43378917_43394800	0/0	t0008	1162	1	0	0	1	0	0	copy fasta	MED8	chr1	43378917	43394800
MED8_chr1_43378917_43394800	0/0	t0009	1162	1	1	0	0	0	0	copy fasta	MED8	chr1	43378917	43394800
MED8_chr1_43378917_43394800	0/0	t0010	1162	1	0	0	1	0	0	copy fasta	MED8	chr1	43378917	43394800
MED8_chr1_43378917_43394800	0/0	t0011	1162	1	1	0	0	0	0	copy fasta	MED8	chr1	43378917	43394800
MED9_chr17_17472000_17498221	1/1	t0001	1769	342	67	69	161	12	31	copy fasta	MED9	chr17	17472000	17498221
MED9_chr17_17472000_17498221	0/0	t0002	1769	11	5	0	0	1	5	copy fasta	MED9	chr17	17472000	17498221
MED9_chr17_17472000_17498221	0/0	t0003	1769	11	0	0	11	0	0	copy fasta	MED9	chr17	17472000	17498221
MED9_chr17_17472000_17498221	0/0	t0004	1765	6	6	0	0	0	0	copy fasta	MED9	chr17	17472000	17498221
MED9_chr17_17472000_17498221	0/0	t0005	1769	5	5	0	0	0	0	copy fasta	MED9	chr17	17472000	17498221
MED9_chr17_17472000_17498221	0/0	t0006	1769	4	4	0	0	0	0	copy fasta	MED9	chr17	17472000	17498221
MED9_chr17_17472000_17498221	0/0	t0007	1769	4	0	0	0	3	1	copy fasta	MED9	chr17	17472000	17498221
MED9_chr17_17472000_17498221	0/0	t0008	1769	3	0	0	3	0	0	copy fasta	MED9	chr17	17472000	17498221
MED9_chr17_17472000_17498221	0/0	t0009	1769	2	1	1	0	0	0	copy fasta	MED9	chr17	17472000	17498221
MED9_chr17_17472000_17498221	0/0	t0010	1773	2	2	0	0	0	0	copy fasta	MED9	chr17	17472000	17498221
MED9_chr17_17472000_17498221	0/0	t0011	1769	2	0	2	0	0	0	copy fasta	MED9	chr17	17472000	17498221
MED9_chr17_17472000_17498221	0/0	t0012	1773	2	2	0	0	0	0	copy fasta	MED9	chr17	17472000	17498221
MED9_chr17_17472000_17498221	0/0	t0013	1769	1	0	0	1	0	0	copy fasta	MED9	chr17	17472000	17498221