JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MED9_chr17_17472000_17498221	0/0	t0014	1769	1	0	0	0	0	1	copy fasta	MED9	chr17	17472000	17498221
MED9_chr17_17472000_17498221	0/0	t0015	1769	1	0	0	1	0	0	copy fasta	MED9	chr17	17472000	17498221
MED9_chr17_17472000_17498221	0/0	t0016	1769	1	0	0	1	0	0	copy fasta	MED9	chr17	17472000	17498221
MED9_chr17_17472000_17498221	0/0	t0017	1769	1	1	0	0	0	0	copy fasta	MED9	chr17	17472000	17498221
MED9_chr17_17472000_17498221	0/0	t0018	1769	1	0	1	0	0	0	copy fasta	MED9	chr17	17472000	17498221
MED9_chr17_17472000_17498221	0/0	t0019	1769	1	1	0	0	0	0	copy fasta	MED9	chr17	17472000	17498221
MED9_chr17_17472000_17498221	0/0	t0020	1769	1	1	0	0	0	0	copy fasta	MED9	chr17	17472000	17498221
MED9_chr17_17472000_17498221	0/0	t0021	1769	1	1	0	0	0	0	copy fasta	MED9	chr17	17472000	17498221
MED9_chr17_17472000_17498221	0/0	t0022	1769	1	0	1	0	0	0	copy fasta	MED9	chr17	17472000	17498221
MEDAG_chr13_30901271_30930572	1/1	t0001	1383	302	70	66	117	13	34	copy fasta	MEDAG	chr13	30901271	30930572
MEDAG_chr13_30901271_30930572	0/0	t0002	1383	112	22	10	68	1	11	copy fasta	MEDAG	chr13	30901271	30930572
MEDAG_chr13_30901271_30930572	0/0	t0003	1383	11	3	3	0	4	1	copy fasta	MEDAG	chr13	30901271	30930572
MEDAG_chr13_30901271_30930572	0/0	t0004	1383	7	0	0	7	0	0	copy fasta	MEDAG	chr13	30901271	30930572
MEDAG_chr13_30901271_30930572	0/0	t0005	1383	3	0	0	0	0	3	copy fasta	MEDAG	chr13	30901271	30930572
MEDAG_chr13_30901271_30930572	0/0	t0006	1383	2	0	0	2	0	0	copy fasta	MEDAG	chr13	30901271	30930572
MEDAG_chr13_30901271_30930572	0/0	t0007	1383	2	0	0	2	0	0	copy fasta	MEDAG	chr13	30901271	30930572
MEDAG_chr13_30901271_30930572	0/0	t0008	1383	2	2	0	0	0	0	copy fasta	MEDAG	chr13	30901271	30930572
MEDAG_chr13_30901271_30930572	0/0	t0009	1383	2	0	0	2	0	0	copy fasta	MEDAG	chr13	30901271	30930572
MEDAG_chr13_30901271_30930572	0/0	t0010	1383	1	1	0	0	0	0	copy fasta	MEDAG	chr13	30901271	30930572
MEDAG_chr13_30901271_30930572	0/0	t0011	1383	1	0	0	0	0	1	copy fasta	MEDAG	chr13	30901271	30930572
MEDAG_chr13_30901271_30930572	0/0	t0012	1383	1	1	0	0	0	0	copy fasta	MEDAG	chr13	30901271	30930572
MEDAG_chr13_30901271_30930572	0/0	t0013	1383	1	0	1	0	0	0	copy fasta	MEDAG	chr13	30901271	30930572
MEDAG_chr13_30901271_30930572	0/0	t0014	1383	1	0	0	1	0	0	copy fasta	MEDAG	chr13	30901271	30930572
MEDAG_chr13_30901271_30930572	0/0	t0015	1383	1	0	0	1	0	0	copy fasta	MEDAG	chr13	30901271	30930572
MEDAG_chr13_30901271_30930572	0/0	t0016	1383	1	0	0	1	0	0	copy fasta	MEDAG	chr13	30901271	30930572
MEDAG_chr13_30901271_30930572	0/0	t0017	1383	1	1	0	0	0	0	copy fasta	MEDAG	chr13	30901271	30930572
MEDAG_chr13_30901271_30930572	0/0	t0018	1383	1	0	0	1	0	0	copy fasta	MEDAG	chr13	30901271	30930572
MEF2A_chr15_99560984_99721488	0/1	t0001	4066	49	5	10	21	6	6	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	t0002	4065	41	3	11	25	0	2	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	t0003	4062	14	14	0	0	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	t0004	4065	14	3	3	7	1	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	t0005	4061	10	0	1	5	0	4	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	t0006	4066	9	5	0	4	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	t0007	4061	8	0	0	8	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	t0008	4061	8	0	4	0	1	3	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	t0009	4068	8	7	1	0	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	t0010	4066	8	0	6	1	1	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	t0011	4066	6	1	0	4	0	1	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	t0012	4061	5	0	0	5	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	t0013	4062	5	0	0	5	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	t0014	4062	5	0	2	0	2	1	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	t0015	4062	5	4	1	0	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	t0016	4065	5	0	0	4	1	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	t0017	4061	4	3	1	0	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	t0018	4062	4	0	2	2	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	t0019	4061	4	0	0	4	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	t0020	4062	3	3	0	0	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	t0021	4062	3	0	0	3	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	t0022	4061	3	0	0	0	1	2	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	t0023	4062	3	0	1	2	0	0	copy fasta	MEF2A	chr15	99560984	99721488