JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MEF2A_chr15_99560984_99721488	0/0	t0024	4066	3	0	0	2	0	1	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	t0025	4066	3	0	0	3	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	t0026	4067	3	0	1	1	0	1	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	t0027	4067	3	2	0	1	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	t0028	4065	3	2	1	0	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	t0029	4061	2	0	0	2	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	t0030	4061	2	0	0	2	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	t0031	4061	2	0	1	0	0	1	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	t0032	4064	2	2	0	0	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	t0033	4063	2	0	0	0	0	2	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	t0034	4061	2	0	0	2	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	t0035	4061	2	0	2	0	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	t0036	4062	2	0	2	0	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	t0037	4062	2	0	0	1	0	1	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	t0038	4063	2	0	2	0	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	t0039	4066	2	0	0	2	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	t0040	4065	2	0	1	1	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	t0041	4066	2	0	1	1	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	t0042	4066	2	0	0	2	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	t0043	4067	2	0	0	2	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	t0044	4067	2	0	1	1	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	t0045	4065	2	0	0	2	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	t0046	4065	2	1	0	0	0	1	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	t0047	4065	2	2	0	0	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	t0048	4066	2	2	0	0	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	t0049	4067	2	2	0	0	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	t0050	4067	2	1	1	0	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	t0051	4067	2	0	0	0	0	2	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	t0052	4066	2	1	0	1	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	t0053	4066	2	2	0	0	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	t0054	4067	2	0	2	0	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	t0055	4066	2	2	0	0	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	t0056	4062	1	0	0	1	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	t0057	4062	1	0	0	1	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	t0058	4062	1	0	0	0	0	1	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	t0059	4062	1	0	0	0	1	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	t0060	4061	1	0	0	1	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	t0061	4061	1	0	0	1	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	t0062	4063	1	1	0	0	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	t0063	4063	1	1	0	0	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	t0064	4061	1	1	0	0	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	t0065	4061	1	0	0	1	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	t0066	4061	1	1	0	0	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	t0067	4061	1	0	0	1	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	t0068	4061	1	0	1	0	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	t0069	4062	1	1	0	0	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	t0070	4062	1	0	0	1	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	t0071	4062	1	0	0	0	0	1	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	t0072	4062	1	0	0	1	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	t0073	4063	1	0	0	1	0	0	copy fasta	MEF2A	chr15	99560984	99721488