JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MEF2A_chr15_99560984_99721488	0/0	t0124	4067	1	1	0	0	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	t0125	4068	1	1	0	0	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	t0126	4065	1	0	0	1	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	t0127	4067	1	0	0	0	0	1	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	t0128	4067	1	0	1	0	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	t0129	4067	1	0	0	1	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	t0130	4066	1	1	0	0	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	t0131	4066	1	1	0	0	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	t0132	4065	1	1	0	0	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	t0133	4065	1	0	0	1	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	t0134	4065	1	0	0	1	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	t0135	4067	1	1	0	0	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	t0136	4065	1	1	0	0	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	t0137	4067	1	1	0	0	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2A_chr15_99560984_99721488	0/0	t0138	4062	1	1	0	0	0	0	copy fasta	MEF2A	chr15	99560984	99721488
MEF2B_chr19_19140567_19175263	1/1	t0001	319	398	91	64	183	14	44	copy fasta	MEF2B	chr19	19140567	19175263
MEF2B_chr19_19140567_19175263	0/0	t0002	319	4	0	0	4	0	0	copy fasta	MEF2B	chr19	19140567	19175263
MEF2B_chr19_19140567_19175263	0/0	t0003	319	1	1	0	0	0	0	copy fasta	MEF2B	chr19	19140567	19175263
MEF2B_chr19_19140567_19175263	0/0	t0004	319	1	0	0	1	0	0	copy fasta	MEF2B	chr19	19140567	19175263
MEF2C_chr5_88712117_88888184	0/0	t0001	5860	78	11	17	37	4	9	copy fasta	MEF2C	chr5	88712117	88888184
MEF2C_chr5_88712117_88888184	0/0	t0002	5861	71	17	6	37	1	10	copy fasta	MEF2C	chr5	88712117	88888184
MEF2C_chr5_88712117_88888184	1/0	t0003	5860	54	6	15	26	2	4	copy fasta	MEF2C	chr5	88712117	88888184
MEF2C_chr5_88712117_88888184	0/1	t0004	5859	35	21	8	0	3	2	copy fasta	MEF2C	chr5	88712117	88888184
MEF2C_chr5_88712117_88888184	0/0	t0005	5859	5	4	1	0	0	0	copy fasta	MEF2C	chr5	88712117	88888184
MEF2C_chr5_88712117_88888184	0/0	t0006	5860	5	0	0	5	0	0	copy fasta	MEF2C	chr5	88712117	88888184
MEF2C_chr5_88712117_88888184	0/0	t0007	5860	5	5	0	0	0	0	copy fasta	MEF2C	chr5	88712117	88888184
MEF2C_chr5_88712117_88888184	0/0	t0008	5861	5	0	2	3	0	0	copy fasta	MEF2C	chr5	88712117	88888184
MEF2C_chr5_88712117_88888184	0/0	t0009	5859	4	0	1	3	0	0	copy fasta	MEF2C	chr5	88712117	88888184
MEF2C_chr5_88712117_88888184	0/0	t0010	5862	3	0	0	0	2	1	copy fasta	MEF2C	chr5	88712117	88888184
MEF2C_chr5_88712117_88888184	0/0	t0011	5861	3	0	0	3	0	0	copy fasta	MEF2C	chr5	88712117	88888184
MEF2C_chr5_88712117_88888184	0/0	t0012	5860	3	0	3	0	0	0	copy fasta	MEF2C	chr5	88712117	88888184
MEF2C_chr5_88712117_88888184	0/0	t0013	5860	3	0	0	3	0	0	copy fasta	MEF2C	chr5	88712117	88888184
MEF2C_chr5_88712117_88888184	0/0	t0014	5859	2	2	0	0	0	0	copy fasta	MEF2C	chr5	88712117	88888184
MEF2C_chr5_88712117_88888184	0/0	t0015	5860	2	2	0	0	0	0	copy fasta	MEF2C	chr5	88712117	88888184
MEF2C_chr5_88712117_88888184	0/0	t0016	5861	2	0	0	0	2	0	copy fasta	MEF2C	chr5	88712117	88888184
MEF2C_chr5_88712117_88888184	0/0	t0017	5860	1	0	0	1	0	0	copy fasta	MEF2C	chr5	88712117	88888184
MEF2C_chr5_88712117_88888184	0/0	t0018	5860	1	0	1	0	0	0	copy fasta	MEF2C	chr5	88712117	88888184
MEF2C_chr5_88712117_88888184	0/0	t0019	5860	1	1	0	0	0	0	copy fasta	MEF2C	chr5	88712117	88888184
MEF2C_chr5_88712117_88888184	0/0	t0020	5859	1	1	0	0	0	0	copy fasta	MEF2C	chr5	88712117	88888184
MEF2C_chr5_88712117_88888184	0/0	t0021	5861	1	0	0	1	0	0	copy fasta	MEF2C	chr5	88712117	88888184
MEF2C_chr5_88712117_88888184	0/0	t0022	5861	1	0	0	1	0	0	copy fasta	MEF2C	chr5	88712117	88888184
MEF2C_chr5_88712117_88888184	0/0	t0023	5861	1	0	0	1	0	0	copy fasta	MEF2C	chr5	88712117	88888184
MEF2C_chr5_88712117_88888184	0/0	t0024	5861	1	1	0	0	0	0	copy fasta	MEF2C	chr5	88712117	88888184
MEF2C_chr5_88712117_88888184	0/0	t0025	5860	1	1	0	0	0	0	copy fasta	MEF2C	chr5	88712117	88888184
MEF2C_chr5_88712117_88888184	0/0	t0026	5860	1	1	0	0	0	0	copy fasta	MEF2C	chr5	88712117	88888184
MEF2C_chr5_88712117_88888184	0/0	t0027	5860	1	0	1	0	0	0	copy fasta	MEF2C	chr5	88712117	88888184
MEF2C_chr5_88712117_88888184	0/0	t0028	5860	1	0	0	0	0	1	copy fasta	MEF2C	chr5	88712117	88888184
MEF2C_chr5_88712117_88888184	0/0	t0029	5861	1	1	0	0	0	0	copy fasta	MEF2C	chr5	88712117	88888184
MEF2C_chr5_88712117_88888184	0/0	t0030	5861	1	1	0	0	0	0	copy fasta	MEF2C	chr5	88712117	88888184
MEF2C_chr5_88712117_88888184	0/0	t0031	5860	1	0	0	0	0	1	copy fasta	MEF2C	chr5	88712117	88888184