JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MEF2C_chr5_88712117_88888184	0/0	t0032	5860	1	0	0	1	0	0	copy fasta	MEF2C	chr5	88712117	88888184
MEF2C_chr5_88712117_88888184	0/0	t0033	5860	1	1	0	0	0	0	copy fasta	MEF2C	chr5	88712117	88888184
MEF2C_chr5_88712117_88888184	0/0	t0034	5860	1	0	1	0	0	0	copy fasta	MEF2C	chr5	88712117	88888184
MEF2C_chr5_88712117_88888184	0/0	t0035	5860	1	1	0	0	0	0	copy fasta	MEF2C	chr5	88712117	88888184
MEF2C_chr5_88712117_88888184	0/0	t0036	5859	1	1	0	0	0	0	copy fasta	MEF2C	chr5	88712117	88888184
MEF2C_chr5_88712117_88888184	0/0	t0037	5860	1	0	0	0	0	1	copy fasta	MEF2C	chr5	88712117	88888184
MEF2C_chr5_88712117_88888184	0/0	t0038	5860	1	0	0	0	0	1	copy fasta	MEF2C	chr5	88712117	88888184
MEF2D_chr1_156458727_156505775	0/1	t0001	4347	108	25	26	37	6	13	copy fasta	MEF2D	chr1	156458727	156505775
MEF2D_chr1_156458727_156505775	1/0	t0002	4347	62	15	21	19	2	4	copy fasta	MEF2D	chr1	156458727	156505775
MEF2D_chr1_156458727_156505775	0/0	t0003	4349	17	7	1	9	0	0	copy fasta	MEF2D	chr1	156458727	156505775
MEF2D_chr1_156458727_156505775	0/0	t0004	4347	12	0	1	11	0	0	copy fasta	MEF2D	chr1	156458727	156505775
MEF2D_chr1_156458727_156505775	0/0	t0005	4347	9	3	2	0	2	2	copy fasta	MEF2D	chr1	156458727	156505775
MEF2D_chr1_156458727_156505775	0/0	t0006	4348	8	6	2	0	0	0	copy fasta	MEF2D	chr1	156458727	156505775
MEF2D_chr1_156458727_156505775	0/0	t0007	4349	8	8	0	0	0	0	copy fasta	MEF2D	chr1	156458727	156505775
MEF2D_chr1_156458727_156505775	0/0	t0008	4348	5	5	0	0	0	0	copy fasta	MEF2D	chr1	156458727	156505775
MEF2D_chr1_156458727_156505775	0/0	t0009	4347	4	0	1	1	0	2	copy fasta	MEF2D	chr1	156458727	156505775
MEF2D_chr1_156458727_156505775	0/0	t0010	4349	4	4	0	0	0	0	copy fasta	MEF2D	chr1	156458727	156505775
MEF2D_chr1_156458727_156505775	0/0	t0011	4348	3	1	0	2	0	0	copy fasta	MEF2D	chr1	156458727	156505775
MEF2D_chr1_156458727_156505775	0/0	t0012	4348	3	0	3	0	0	0	copy fasta	MEF2D	chr1	156458727	156505775
MEF2D_chr1_156458727_156505775	0/0	t0013	4348	3	3	0	0	0	0	copy fasta	MEF2D	chr1	156458727	156505775
MEF2D_chr1_156458727_156505775	0/0	t0014	4350	3	3	0	0	0	0	copy fasta	MEF2D	chr1	156458727	156505775
MEF2D_chr1_156458727_156505775	0/0	t0015	4347	2	2	0	0	0	0	copy fasta	MEF2D	chr1	156458727	156505775
MEF2D_chr1_156458727_156505775	0/0	t0016	4347	2	0	0	2	0	0	copy fasta	MEF2D	chr1	156458727	156505775
MEF2D_chr1_156458727_156505775	0/0	t0017	4350	2	2	0	0	0	0	copy fasta	MEF2D	chr1	156458727	156505775
MEF2D_chr1_156458727_156505775	0/0	t0018	4350	2	1	0	1	0	0	copy fasta	MEF2D	chr1	156458727	156505775
MEF2D_chr1_156458727_156505775	0/0	t0019	4347	2	1	1	0	0	0	copy fasta	MEF2D	chr1	156458727	156505775
MEF2D_chr1_156458727_156505775	0/0	t0020	4347	1	0	0	0	1	0	copy fasta	MEF2D	chr1	156458727	156505775
MEF2D_chr1_156458727_156505775	0/0	t0021	4347	1	0	0	0	0	1	copy fasta	MEF2D	chr1	156458727	156505775
MEF2D_chr1_156458727_156505775	0/0	t0022	4347	1	0	0	0	1	0	copy fasta	MEF2D	chr1	156458727	156505775
MEF2D_chr1_156458727_156505775	0/0	t0023	4347	1	1	0	0	0	0	copy fasta	MEF2D	chr1	156458727	156505775
MEF2D_chr1_156458727_156505775	0/0	t0024	4347	1	1	0	0	0	0	copy fasta	MEF2D	chr1	156458727	156505775
MEF2D_chr1_156458727_156505775	0/0	t0025	4347	1	0	0	1	0	0	copy fasta	MEF2D	chr1	156458727	156505775
MEF2D_chr1_156458727_156505775	0/0	t0026	4347	1	1	0	0	0	0	copy fasta	MEF2D	chr1	156458727	156505775
MEF2D_chr1_156458727_156505775	0/0	t0027	4347	1	1	0	0	0	0	copy fasta	MEF2D	chr1	156458727	156505775
MEF2D_chr1_156458727_156505775	0/0	t0028	4347	1	1	0	0	0	0	copy fasta	MEF2D	chr1	156458727	156505775
MEF2D_chr1_156458727_156505775	0/0	t0029	4347	1	0	0	1	0	0	copy fasta	MEF2D	chr1	156458727	156505775
MEF2D_chr1_156458727_156505775	0/0	t0030	4347	1	0	0	1	0	0	copy fasta	MEF2D	chr1	156458727	156505775
MEF2D_chr1_156458727_156505775	0/0	t0031	4347	1	1	0	0	0	0	copy fasta	MEF2D	chr1	156458727	156505775
MEF2D_chr1_156458727_156505775	0/0	t0032	4347	1	0	0	0	0	1	copy fasta	MEF2D	chr1	156458727	156505775
MEF2D_chr1_156458727_156505775	0/0	t0033	4347	1	0	0	1	0	0	copy fasta	MEF2D	chr1	156458727	156505775
MEF2D_chr1_156458727_156505775	0/0	t0034	4347	1	1	0	0	0	0	copy fasta	MEF2D	chr1	156458727	156505775
MEF2D_chr1_156458727_156505775	0/0	t0035	4347	1	1	0	0	0	0	copy fasta	MEF2D	chr1	156458727	156505775
MEF2D_chr1_156458727_156505775	0/0	t0036	4347	1	1	0	0	0	0	copy fasta	MEF2D	chr1	156458727	156505775
MEF2D_chr1_156458727_156505775	0/0	t0037	4348	1	0	0	1	0	0	copy fasta	MEF2D	chr1	156458727	156505775
MEF2D_chr1_156458727_156505775	0/0	t0038	4347	1	1	0	0	0	0	copy fasta	MEF2D	chr1	156458727	156505775
MEF2D_chr1_156458727_156505775	0/0	t0039	4347	1	0	0	0	0	1	copy fasta	MEF2D	chr1	156458727	156505775
MEF2D_chr1_156458727_156505775	0/0	t0040	4348	1	1	0	0	0	0	copy fasta	MEF2D	chr1	156458727	156505775
MEF2D_chr1_156458727_156505775	0/0	t0041	4347	1	0	0	1	0	0	copy fasta	MEF2D	chr1	156458727	156505775
MEF2D_chr1_156458727_156505775	0/0	t0042	4350	1	1	0	0	0	0	copy fasta	MEF2D	chr1	156458727	156505775
MEFV_chr16_3237027_3261633	0/1	t0001	1161	182	45	45	58	9	24	copy fasta	MEFV	chr16	3237027	3261633