JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MEFV_chr16_3237027_3261633	1/0	t0002	1161	61	6	19	24	6	5	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	t0003	1161	42	0	1	39	0	2	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	t0004	1160	39	13	0	25	0	1	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	t0005	1160	13	1	0	11	1	0	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	t0006	1162	9	0	0	9	0	0	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	t0007	1162	9	1	0	6	0	2	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	t0008	1162	9	4	4	1	0	0	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	t0009	1162	7	0	4	3	0	0	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	t0010	1159	6	5	1	0	0	0	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	t0011	1161	5	5	0	0	0	0	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	t0012	1161	4	0	1	0	0	3	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	t0013	1164	4	2	0	1	0	1	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	t0014	1160	4	0	1	2	0	1	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	t0015	1160	3	1	0	1	0	1	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	t0016	1161	3	0	0	3	0	0	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	t0017	1161	3	2	0	1	0	0	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	t0018	1159	3	3	0	0	0	0	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	t0019	1161	2	2	0	0	0	0	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	t0020	1161	2	2	0	0	0	0	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	t0021	1163	2	2	0	0	0	0	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	t0022	1161	2	0	0	2	0	0	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	t0023	1158	2	1	1	0	0	0	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	t0024	1160	1	0	0	1	0	0	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	t0025	1165	1	0	0	1	0	0	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	t0026	1162	1	1	0	0	0	0	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	t0027	1162	1	1	0	0	0	0	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	t0028	1161	1	0	0	1	0	0	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	t0029	1163	1	0	0	1	0	0	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	t0030	1161	1	0	1	0	0	0	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	t0031	1159	1	0	0	1	0	0	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	t0032	1160	1	0	0	1	0	0	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	t0033	1161	1	1	0	0	0	0	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	t0034	1161	1	0	0	1	0	0	copy fasta	MEFV	chr16	3237027	3261633
MEFV_chr16_3237027_3261633	0/0	t0035	1162	1	0	0	1	0	0	copy fasta	MEFV	chr16	3237027	3261633
MEGF10_chr5_127285796_127466222	1/1	t0001	4184	76	18	13	33	3	7	copy fasta	MEGF10	chr5	127285796	127466222
MEGF10_chr5_127285796_127466222	0/0	t0002	4182	45	5	7	25	1	7	copy fasta	MEGF10	chr5	127285796	127466222
MEGF10_chr5_127285796_127466222	0/0	t0003	4182	23	7	9	4	3	0	copy fasta	MEGF10	chr5	127285796	127466222
MEGF10_chr5_127285796_127466222	0/0	t0004	4184	21	18	3	0	0	0	copy fasta	MEGF10	chr5	127285796	127466222
MEGF10_chr5_127285796_127466222	0/0	t0005	4184	15	5	0	8	0	2	copy fasta	MEGF10	chr5	127285796	127466222
MEGF10_chr5_127285796_127466222	0/0	t0006	4182	10	0	0	10	0	0	copy fasta	MEGF10	chr5	127285796	127466222
MEGF10_chr5_127285796_127466222	0/0	t0007	4184	10	0	0	6	1	3	copy fasta	MEGF10	chr5	127285796	127466222
MEGF10_chr5_127285796_127466222	0/0	t0008	4184	7	7	0	0	0	0	copy fasta	MEGF10	chr5	127285796	127466222
MEGF10_chr5_127285796_127466222	0/0	t0009	4182	7	0	2	3	2	0	copy fasta	MEGF10	chr5	127285796	127466222
MEGF10_chr5_127285796_127466222	0/0	t0010	4180	5	0	4	0	0	1	copy fasta	MEGF10	chr5	127285796	127466222
MEGF10_chr5_127285796_127466222	0/0	t0011	4180	4	0	0	4	0	0	copy fasta	MEGF10	chr5	127285796	127466222
MEGF10_chr5_127285796_127466222	0/0	t0012	4180	4	1	3	0	0	0	copy fasta	MEGF10	chr5	127285796	127466222
MEGF10_chr5_127285796_127466222	0/0	t0013	4182	3	0	1	2	0	0	copy fasta	MEGF10	chr5	127285796	127466222
MEGF10_chr5_127285796_127466222	0/0	t0014	4182	3	2	1	0	0	0	copy fasta	MEGF10	chr5	127285796	127466222
MEGF10_chr5_127285796_127466222	0/0	t0015	4182	3	0	1	1	0	1	copy fasta	MEGF10	chr5	127285796	127466222
MEGF10_chr5_127285796_127466222	0/0	t0016	4184	2	0	0	0	0	2	copy fasta	MEGF10	chr5	127285796	127466222