JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MEGF10_chr5_127285796_127466222	0/0	t0017	4182	2	0	0	0	0	2	copy fasta	MEGF10	chr5	127285796	127466222
MEGF10_chr5_127285796_127466222	0/0	t0018	4184	2	2	0	0	0	0	copy fasta	MEGF10	chr5	127285796	127466222
MEGF10_chr5_127285796_127466222	0/0	t0019	4182	2	2	0	0	0	0	copy fasta	MEGF10	chr5	127285796	127466222
MEGF10_chr5_127285796_127466222	0/0	t0020	4182	2	1	1	0	0	0	copy fasta	MEGF10	chr5	127285796	127466222
MEGF10_chr5_127285796_127466222	0/0	t0021	4182	2	1	1	0	0	0	copy fasta	MEGF10	chr5	127285796	127466222
MEGF10_chr5_127285796_127466222	0/0	t0022	4182	2	2	0	0	0	0	copy fasta	MEGF10	chr5	127285796	127466222
MEGF10_chr5_127285796_127466222	0/0	t0023	4184	1	1	0	0	0	0	copy fasta	MEGF10	chr5	127285796	127466222
MEGF10_chr5_127285796_127466222	0/0	t0024	4180	1	1	0	0	0	0	copy fasta	MEGF10	chr5	127285796	127466222
MEGF10_chr5_127285796_127466222	0/0	t0025	4182	1	0	1	0	0	0	copy fasta	MEGF10	chr5	127285796	127466222
MEGF10_chr5_127285796_127466222	0/0	t0026	4182	1	0	1	0	0	0	copy fasta	MEGF10	chr5	127285796	127466222
MEGF10_chr5_127285796_127466222	0/0	t0027	4184	1	0	0	1	0	0	copy fasta	MEGF10	chr5	127285796	127466222
MEGF10_chr5_127285796_127466222	0/0	t0028	4182	1	0	1	0	0	0	copy fasta	MEGF10	chr5	127285796	127466222
MEGF10_chr5_127285796_127466222	0/0	t0029	4184	1	1	0	0	0	0	copy fasta	MEGF10	chr5	127285796	127466222
MEGF10_chr5_127285796_127466222	0/0	t0030	4182	1	1	0	0	0	0	copy fasta	MEGF10	chr5	127285796	127466222
MEGF10_chr5_127285796_127466222	0/0	t0031	4182	1	1	0	0	0	0	copy fasta	MEGF10	chr5	127285796	127466222
MEGF10_chr5_127285796_127466222	0/0	t0032	4184	1	0	1	0	0	0	copy fasta	MEGF10	chr5	127285796	127466222
MEGF10_chr5_127285796_127466222	0/0	t0033	4182	1	0	0	1	0	0	copy fasta	MEGF10	chr5	127285796	127466222
MEGF10_chr5_127285796_127466222	0/0	t0034	4184	1	0	0	1	0	0	copy fasta	MEGF10	chr5	127285796	127466222
MEGF10_chr5_127285796_127466222	0/0	t0035	4184	1	0	0	0	0	1	copy fasta	MEGF10	chr5	127285796	127466222
MEGF10_chr5_127285796_127466222	0/0	t0036	4184	1	0	1	0	0	0	copy fasta	MEGF10	chr5	127285796	127466222
MEGF10_chr5_127285796_127466222	0/0	t0037	4180	1	0	0	1	0	0	copy fasta	MEGF10	chr5	127285796	127466222
MEGF10_chr5_127285796_127466222	0/0	t0038	4182	1	0	1	0	0	0	copy fasta	MEGF10	chr5	127285796	127466222
MEGF10_chr5_127285796_127466222	0/0	t0039	4182	1	1	0	0	0	0	copy fasta	MEGF10	chr5	127285796	127466222
MEGF10_chr5_127285796_127466222	0/0	t0040	4182	1	1	0	0	0	0	copy fasta	MEGF10	chr5	127285796	127466222
MEGF11_chr15_65890299_66258750	1/0	t0001	2790	107	47	21	25	4	9	copy fasta	MEGF11	chr15	65890299	66258750
MEGF11_chr15_65890299_66258750	0/1	t0002	2789	24	6	7	6	1	3	copy fasta	MEGF11	chr15	65890299	66258750
MEGF11_chr15_65890299_66258750	0/0	t0003	2790	11	3	3	2	1	2	copy fasta	MEGF11	chr15	65890299	66258750
MEGF11_chr15_65890299_66258750	0/0	t0004	2790	9	1	6	0	1	1	copy fasta	MEGF11	chr15	65890299	66258750
MEGF11_chr15_65890299_66258750	0/0	t0005	2790	5	5	0	0	0	0	copy fasta	MEGF11	chr15	65890299	66258750
MEGF11_chr15_65890299_66258750	0/0	t0006	2792	4	2	0	0	1	1	copy fasta	MEGF11	chr15	65890299	66258750
MEGF11_chr15_65890299_66258750	0/0	t0007	2790	3	0	0	1	0	2	copy fasta	MEGF11	chr15	65890299	66258750
MEGF11_chr15_65890299_66258750	0/0	t0008	2789	3	0	1	0	1	1	copy fasta	MEGF11	chr15	65890299	66258750
MEGF11_chr15_65890299_66258750	0/0	t0009	2790	2	2	0	0	0	0	copy fasta	MEGF11	chr15	65890299	66258750
MEGF11_chr15_65890299_66258750	0/0	t0010	2790	1	0	0	0	0	1	copy fasta	MEGF11	chr15	65890299	66258750
MEGF11_chr15_65890299_66258750	0/0	t0011	2790	1	0	0	0	0	1	copy fasta	MEGF11	chr15	65890299	66258750
MEGF11_chr15_65890299_66258750	0/0	t0012	2790	1	1	0	0	0	0	copy fasta	MEGF11	chr15	65890299	66258750
MEGF11_chr15_65890299_66258750	0/0	t0013	2790	1	1	0	0	0	0	copy fasta	MEGF11	chr15	65890299	66258750
MEGF11_chr15_65890299_66258750	0/0	t0014	2789	1	0	0	0	0	1	copy fasta	MEGF11	chr15	65890299	66258750
MEGF11_chr15_65890299_66258750	0/0	t0015	2789	1	0	0	0	0	1	copy fasta	MEGF11	chr15	65890299	66258750
MEGF11_chr15_65890299_66258750	0/0	t0016	2789	1	0	0	0	1	0	copy fasta	MEGF11	chr15	65890299	66258750
MEGF11_chr15_65890299_66258750	0/0	t0017	2789	1	0	0	0	0	1	copy fasta	MEGF11	chr15	65890299	66258750
MEGF6_chr1_3482951_3616508	0/1	t0001	2818	120	5	30	50	10	24	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	t0002	2818	18	1	7	10	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	t0003	2818	13	3	5	5	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	t0004	2818	9	3	1	4	0	1	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	t0005	2818	7	7	0	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	t0006	2818	7	0	0	7	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	t0007	2818	7	2	1	2	0	2	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	t0008	2818	7	6	1	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	t0009	2818	6	4	1	0	1	0	copy fasta	MEGF6	chr1	3482951	3616508