JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MEGF6_chr1_3482951_3616508	0/0	t0010	2818	5	5	0	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	t0011	2818	5	4	1	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	t0012	2818	4	4	0	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	t0013	2818	4	2	2	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	t0014	2818	4	0	1	1	0	2	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	t0015	2818	3	3	0	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	t0016	2818	3	0	0	3	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	t0017	2818	3	1	2	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	t0018	2818	3	0	0	3	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	1/0	t0019	2818	3	0	1	1	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	t0020	2818	3	1	0	2	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	t0021	2818	2	0	0	2	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	t0022	2818	2	2	0	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	t0023	2818	2	2	0	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	t0024	2818	2	0	0	2	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	t0025	2818	2	0	2	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	t0026	2817	2	2	0	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	t0027	2817	2	2	0	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	t0028	2818	2	2	0	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	t0029	2818	2	2	0	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	t0030	2818	2	1	1	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	t0031	2818	2	2	0	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	t0032	2818	2	2	0	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	t0033	2818	2	2	0	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	t0034	2818	2	2	0	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	t0035	2818	1	1	0	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	t0036	2818	1	0	1	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	t0037	2818	1	1	0	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	t0038	2818	1	1	0	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	t0039	2818	1	0	0	1	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	t0040	2818	1	0	0	0	0	1	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	t0041	2818	1	0	1	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	t0042	2818	1	0	0	1	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	t0043	2818	1	1	0	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	t0044	2818	1	1	0	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	t0045	2818	1	0	1	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	t0046	2818	1	0	0	1	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	t0047	2818	1	0	1	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	t0048	2818	1	0	0	0	1	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	t0049	2817	1	1	0	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	t0050	2818	1	1	0	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	t0051	2818	1	0	0	1	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	t0052	2818	1	1	0	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	t0053	2817	1	1	0	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	t0054	2818	1	1	0	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	t0055	2818	1	1	0	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	t0056	2818	1	1	0	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	t0057	2818	1	1	0	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	t0058	2818	1	1	0	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	t0059	2818	1	1	0	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508