JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MEGF9_chr9_120595811_120719470	0/0	t0022	4492	1	0	0	0	0	1	copy fasta	MEGF9	chr9	120595811	120719470
MEGF9_chr9_120595811_120719470	0/0	t0023	4492	1	0	0	1	0	0	copy fasta	MEGF9	chr9	120595811	120719470
MEGF9_chr9_120595811_120719470	0/0	t0024	4492	1	0	1	0	0	0	copy fasta	MEGF9	chr9	120595811	120719470
MEGF9_chr9_120595811_120719470	0/0	t0025	4492	1	0	0	1	0	0	copy fasta	MEGF9	chr9	120595811	120719470
MEGF9_chr9_120595811_120719470	0/0	t0026	4492	1	0	0	1	0	0	copy fasta	MEGF9	chr9	120595811	120719470
MEGF9_chr9_120595811_120719470	0/0	t0027	4493	1	1	0	0	0	0	copy fasta	MEGF9	chr9	120595811	120719470
MEI1_chr22_41694503_41804454	1/1	t0001	192	160	36	29	67	9	17	copy fasta	MEI1	chr22	41694503	41804454
MEI1_chr22_41694503_41804454	0/0	t0002	192	49	2	22	13	3	9	copy fasta	MEI1	chr22	41694503	41804454
MEI1_chr22_41694503_41804454	0/0	t0003	194	24	24	0	0	0	0	copy fasta	MEI1	chr22	41694503	41804454
MEI1_chr22_41694503_41804454	0/0	t0004	189	23	20	3	0	0	0	copy fasta	MEI1	chr22	41694503	41804454
MEI1_chr22_41694503_41804454	0/0	t0005	192	3	3	0	0	0	0	copy fasta	MEI1	chr22	41694503	41804454
MEI1_chr22_41694503_41804454	0/0	t0006	191	1	1	0	0	0	0	copy fasta	MEI1	chr22	41694503	41804454
MEI4_chr6_77648039_77932045	0/0	t0001	3761	82	13	23	35	5	6	copy fasta	MEI4	chr6	77648039	77932045
MEI4_chr6_77648039_77932045	0/1	t0002	3761	68	7	13	36	4	7	copy fasta	MEI4	chr6	77648039	77932045
MEI4_chr6_77648039_77932045	0/0	t0003	3760	46	1	7	37	0	1	copy fasta	MEI4	chr6	77648039	77932045
MEI4_chr6_77648039_77932045	1/0	t0004	3768	33	2	15	6	3	6	copy fasta	MEI4	chr6	77648039	77932045
MEI4_chr6_77648039_77932045	0/0	t0005	3762	31	7	3	19	0	2	copy fasta	MEI4	chr6	77648039	77932045
MEI4_chr6_77648039_77932045	0/0	t0006	3760	30	25	4	1	0	0	copy fasta	MEI4	chr6	77648039	77932045
MEI4_chr6_77648039_77932045	0/0	t0007	3765	15	14	1	0	0	0	copy fasta	MEI4	chr6	77648039	77932045
MEI4_chr6_77648039_77932045	0/0	t0008	3761	11	0	0	11	0	0	copy fasta	MEI4	chr6	77648039	77932045
MEI4_chr6_77648039_77932045	0/0	t0009	3760	6	0	0	6	0	0	copy fasta	MEI4	chr6	77648039	77932045
MEI4_chr6_77648039_77932045	0/0	t0010	3761	6	0	2	3	0	1	copy fasta	MEI4	chr6	77648039	77932045
MEI4_chr6_77648039_77932045	0/0	t0011	3758	4	4	0	0	0	0	copy fasta	MEI4	chr6	77648039	77932045
MEI4_chr6_77648039_77932045	0/0	t0012	3761	4	3	1	0	0	0	copy fasta	MEI4	chr6	77648039	77932045
MEI4_chr6_77648039_77932045	0/0	t0013	3766	3	3	0	0	0	0	copy fasta	MEI4	chr6	77648039	77932045
MEI4_chr6_77648039_77932045	0/0	t0014	3768	2	2	0	0	0	0	copy fasta	MEI4	chr6	77648039	77932045
MEI4_chr6_77648039_77932045	0/0	t0015	3758	2	1	1	0	0	0	copy fasta	MEI4	chr6	77648039	77932045
MEI4_chr6_77648039_77932045	0/0	t0016	3760	1	0	0	1	0	0	copy fasta	MEI4	chr6	77648039	77932045
MEI4_chr6_77648039_77932045	0/0	t0017	3760	1	0	0	1	0	0	copy fasta	MEI4	chr6	77648039	77932045
MEI4_chr6_77648039_77932045	0/0	t0018	3760	1	0	0	1	0	0	copy fasta	MEI4	chr6	77648039	77932045
MEI4_chr6_77648039_77932045	0/0	t0019	3760	1	0	0	1	0	0	copy fasta	MEI4	chr6	77648039	77932045
MEI4_chr6_77648039_77932045	0/0	t0020	3760	1	0	0	1	0	0	copy fasta	MEI4	chr6	77648039	77932045
MEI4_chr6_77648039_77932045	0/0	t0021	3761	1	1	0	0	0	0	copy fasta	MEI4	chr6	77648039	77932045
MEI4_chr6_77648039_77932045	0/0	t0022	3761	1	0	0	1	0	0	copy fasta	MEI4	chr6	77648039	77932045
MEI4_chr6_77648039_77932045	0/0	t0023	3765	1	1	0	0	0	0	copy fasta	MEI4	chr6	77648039	77932045
MEI4_chr6_77648039_77932045	0/0	t0024	3760	1	0	0	1	0	0	copy fasta	MEI4	chr6	77648039	77932045
MEI4_chr6_77648039_77932045	0/0	t0025	3762	1	0	0	1	0	0	copy fasta	MEI4	chr6	77648039	77932045
MEI4_chr6_77648039_77932045	0/0	t0026	3765	1	0	0	1	0	0	copy fasta	MEI4	chr6	77648039	77932045
MEI4_chr6_77648039_77932045	0/0	t0027	3760	1	1	0	0	0	0	copy fasta	MEI4	chr6	77648039	77932045
MEI4_chr6_77648039_77932045	0/0	t0028	3760	1	1	0	0	0	0	copy fasta	MEI4	chr6	77648039	77932045
MEI4_chr6_77648039_77932045	0/0	t0029	3761	1	0	0	1	0	0	copy fasta	MEI4	chr6	77648039	77932045
MEI4_chr6_77648039_77932045	0/0	t0030	3761	1	0	0	0	0	1	copy fasta	MEI4	chr6	77648039	77932045
MEI4_chr6_77648039_77932045	0/0	t0031	3761	1	0	0	1	0	0	copy fasta	MEI4	chr6	77648039	77932045
MEI4_chr6_77648039_77932045	0/0	t0032	3761	1	0	0	1	0	0	copy fasta	MEI4	chr6	77648039	77932045
MEIG1_chr10_14954388_14977857	0/1	t0001	416	243	59	56	83	13	31	copy fasta	MEIG1	chr10	14954388	14977857
MEIG1_chr10_14954388_14977857	1/0	t0002	416	194	33	23	115	5	17	copy fasta	MEIG1	chr10	14954388	14977857
MEIG1_chr10_14954388_14977857	0/0	t0003	416	2	2	0	0	0	0	copy fasta	MEIG1	chr10	14954388	14977857
MEIG1_chr10_14954388_14977857	0/0	t0004	447	1	0	0	1	0	0	copy fasta	MEIG1	chr10	14954388	14977857
MEIG1_chr10_14954388_14977857	0/0	t0005	416	1	0	0	1	0	0	copy fasta	MEIG1	chr10	14954388	14977857
MEIG1_chr10_14954388_14977857	0/0	t0006	416	1	0	1	0	0	0	copy fasta	MEIG1	chr10	14954388	14977857