JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MEIKIN_chr5_131801990_131950663	1/1	t0001	405	303	56	56	155	8	26	copy fasta	MEIKIN	chr5	131801990	131950663
MEIKIN_chr5_131801990_131950663	0/0	t0002	405	40	32	8	0	0	0	copy fasta	MEIKIN	chr5	131801990	131950663
MEIKIN_chr5_131801990_131950663	0/0	t0003	405	1	1	0	0	0	0	copy fasta	MEIKIN	chr5	131801990	131950663
MEIKIN_chr5_131801990_131950663	0/0	t0004	405	1	0	0	1	0	0	copy fasta	MEIKIN	chr5	131801990	131950663
MEIKIN_chr5_131801990_131950663	0/0	t0005	405	1	1	0	0	0	0	copy fasta	MEIKIN	chr5	131801990	131950663
MEIOB_chr16_1828986_1877164	1/1	t0001	452	369	80	61	177	7	42	copy fasta	MEIOB	chr16	1828986	1877164
MEIOB_chr16_1828986_1877164	0/0	t0002	452	3	3	0	0	0	0	copy fasta	MEIOB	chr16	1828986	1877164
MEIOB_chr16_1828986_1877164	0/0	t0003	452	2	0	0	2	0	0	copy fasta	MEIOB	chr16	1828986	1877164
MEIOB_chr16_1828986_1877164	0/0	t0004	452	1	0	1	0	0	0	copy fasta	MEIOB	chr16	1828986	1877164
MEIOB_chr16_1828986_1877164	0/0	t0005	452	1	1	0	0	0	0	copy fasta	MEIOB	chr16	1828986	1877164
MEIOB_chr16_1828986_1877164	0/0	t0006	452	1	0	0	1	0	0	copy fasta	MEIOB	chr16	1828986	1877164
MEIOB_chr16_1828986_1877164	0/0	t0007	452	1	1	0	0	0	0	copy fasta	MEIOB	chr16	1828986	1877164
MEIOB_chr16_1828986_1877164	0/0	t0008	452	1	0	0	0	1	0	copy fasta	MEIOB	chr16	1828986	1877164
MEIOB_chr16_1828986_1877164	0/0	t0009	452	1	1	0	0	0	0	copy fasta	MEIOB	chr16	1828986	1877164
MEIOC_chr17_44651468_44680801	0/0	t0001	1752	259	60	55	114	8	22	copy fasta	MEIOC	chr17	44651468	44680801
MEIOC_chr17_44651468_44680801	1/0	t0002	1752	58	18	5	23	3	8	copy fasta	MEIOC	chr17	44651468	44680801
MEIOC_chr17_44651468_44680801	0/0	t0003	1752	9	0	1	7	0	1	copy fasta	MEIOC	chr17	44651468	44680801
MEIOC_chr17_44651468_44680801	0/0	t0004	1752	7	5	2	0	0	0	copy fasta	MEIOC	chr17	44651468	44680801
MEIOC_chr17_44651468_44680801	0/0	t0005	1752	3	3	0	0	0	0	copy fasta	MEIOC	chr17	44651468	44680801
MEIOC_chr17_44651468_44680801	0/0	t0006	1752	2	1	1	0	0	0	copy fasta	MEIOC	chr17	44651468	44680801
MEIOC_chr17_44651468_44680801	0/0	t0007	1752	2	0	1	0	1	0	copy fasta	MEIOC	chr17	44651468	44680801
MEIOC_chr17_44651468_44680801	0/0	t0008	1752	2	0	0	0	2	0	copy fasta	MEIOC	chr17	44651468	44680801
MEIOC_chr17_44651468_44680801	0/0	t0009	1752	2	2	0	0	0	0	copy fasta	MEIOC	chr17	44651468	44680801
MEIOC_chr17_44651468_44680801	0/1	t0010	1752	2	0	0	0	0	1	copy fasta	MEIOC	chr17	44651468	44680801
MEIOC_chr17_44651468_44680801	0/0	t0011	1752	1	0	1	0	0	0	copy fasta	MEIOC	chr17	44651468	44680801
MEIOC_chr17_44651468_44680801	0/0	t0012	1752	1	0	0	0	0	1	copy fasta	MEIOC	chr17	44651468	44680801
MEIOC_chr17_44651468_44680801	0/0	t0013	1752	1	0	1	0	0	0	copy fasta	MEIOC	chr17	44651468	44680801
MEIOC_chr17_44651468_44680801	0/0	t0014	1752	1	0	1	0	0	0	copy fasta	MEIOC	chr17	44651468	44680801
MEIOC_chr17_44651468_44680801	0/0	t0015	1752	1	0	0	0	0	1	copy fasta	MEIOC	chr17	44651468	44680801
MEIOC_chr17_44651468_44680801	0/0	t0016	1752	1	1	0	0	0	0	copy fasta	MEIOC	chr17	44651468	44680801
MEIOSIN_chr19_45728439_45769541	0/1	t0001	652	247	82	39	99	9	17	copy fasta	MEIOSIN	chr19	45728439	45769541
MEIOSIN_chr19_45728439_45769541	0/0	t0002	652	73	2	29	23	6	13	copy fasta	MEIOSIN	chr19	45728439	45769541
MEIOSIN_chr19_45728439_45769541	1/0	t0003	652	35	0	6	22	3	3	copy fasta	MEIOSIN	chr19	45728439	45769541
MEIOSIN_chr19_45728439_45769541	0/0	t0004	652	3	3	0	0	0	0	copy fasta	MEIOSIN	chr19	45728439	45769541
MEIOSIN_chr19_45728439_45769541	0/0	t0005	652	1	1	0	0	0	0	copy fasta	MEIOSIN	chr19	45728439	45769541
MEIOSIN_chr19_45728439_45769541	0/0	t0006	652	1	0	0	0	0	1	copy fasta	MEIOSIN	chr19	45728439	45769541
MEIS1_chr2_66430125_66578869	0/1	t0001	3392	78	17	18	24	6	12	copy fasta	MEIS1	chr2	66430125	66578869
MEIS1_chr2_66430125_66578869	0/0	t0002	3394	50	10	10	28	1	1	copy fasta	MEIS1	chr2	66430125	66578869
MEIS1_chr2_66430125_66578869	0/0	t0003	3392	25	7	0	7	0	11	copy fasta	MEIS1	chr2	66430125	66578869
MEIS1_chr2_66430125_66578869	0/0	t0004	3393	17	3	4	8	0	2	copy fasta	MEIS1	chr2	66430125	66578869
MEIS1_chr2_66430125_66578869	1/0	t0005	3394	13	4	1	5	1	1	copy fasta	MEIS1	chr2	66430125	66578869
MEIS1_chr2_66430125_66578869	0/0	t0006	3395	10	3	0	5	0	2	copy fasta	MEIS1	chr2	66430125	66578869
MEIS1_chr2_66430125_66578869	0/0	t0007	3393	8	3	0	2	0	3	copy fasta	MEIS1	chr2	66430125	66578869
MEIS1_chr2_66430125_66578869	0/0	t0008	3394	5	0	4	1	0	0	copy fasta	MEIS1	chr2	66430125	66578869
MEIS1_chr2_66430125_66578869	0/0	t0009	3393	5	5	0	0	0	0	copy fasta	MEIS1	chr2	66430125	66578869
MEIS1_chr2_66430125_66578869	0/0	t0010	3392	4	2	2	0	0	0	copy fasta	MEIS1	chr2	66430125	66578869
MEIS1_chr2_66430125_66578869	0/0	t0011	3391	3	2	1	0	0	0	copy fasta	MEIS1	chr2	66430125	66578869
MEIS1_chr2_66430125_66578869	0/0	t0012	3394	2	2	0	0	0	0	copy fasta	MEIS1	chr2	66430125	66578869
MEIS1_chr2_66430125_66578869	0/0	t0013	3395	2	1	0	1	0	0	copy fasta	MEIS1	chr2	66430125	66578869
MEIS1_chr2_66430125_66578869	0/0	t0014	3394	1	0	0	1	0	0	copy fasta	MEIS1	chr2	66430125	66578869