JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MEIS1_chr2_66430125_66578869	0/0	t0015	3392	1	0	0	1	0	0	copy fasta	MEIS1	chr2	66430125	66578869
MEIS1_chr2_66430125_66578869	0/0	t0016	3392	1	1	0	0	0	0	copy fasta	MEIS1	chr2	66430125	66578869
MEIS1_chr2_66430125_66578869	0/0	t0017	3391	1	0	0	1	0	0	copy fasta	MEIS1	chr2	66430125	66578869
MEIS1_chr2_66430125_66578869	0/0	t0018	3391	1	1	0	0	0	0	copy fasta	MEIS1	chr2	66430125	66578869
MEIS1_chr2_66430125_66578869	0/0	t0019	3391	1	1	0	0	0	0	copy fasta	MEIS1	chr2	66430125	66578869
MEIS1_chr2_66430125_66578869	0/0	t0020	3391	1	1	0	0	0	0	copy fasta	MEIS1	chr2	66430125	66578869
MEIS1_chr2_66430125_66578869	0/0	t0021	3392	1	1	0	0	0	0	copy fasta	MEIS1	chr2	66430125	66578869
MEIS1_chr2_66430125_66578869	0/0	t0022	3392	1	1	0	0	0	0	copy fasta	MEIS1	chr2	66430125	66578869
MEIS1_chr2_66430125_66578869	0/0	t0023	3392	1	1	0	0	0	0	copy fasta	MEIS1	chr2	66430125	66578869
MEIS1_chr2_66430125_66578869	0/0	t0024	3392	1	1	0	0	0	0	copy fasta	MEIS1	chr2	66430125	66578869
MEIS1_chr2_66430125_66578869	0/0	t0025	3394	1	0	0	1	0	0	copy fasta	MEIS1	chr2	66430125	66578869
MEIS1_chr2_66430125_66578869	0/0	t0026	3394	1	0	0	0	0	1	copy fasta	MEIS1	chr2	66430125	66578869
MEIS1_chr2_66430125_66578869	0/0	t0027	3394	1	1	0	0	0	0	copy fasta	MEIS1	chr2	66430125	66578869
MEIS1_chr2_66430125_66578869	0/0	t0028	3394	1	0	0	1	0	0	copy fasta	MEIS1	chr2	66430125	66578869
MEIS1_chr2_66430125_66578869	0/0	t0029	3394	1	1	0	0	0	0	copy fasta	MEIS1	chr2	66430125	66578869
MEIS1_chr2_66430125_66578869	0/0	t0030	3394	1	1	0	0	0	0	copy fasta	MEIS1	chr2	66430125	66578869
MEIS1_chr2_66430125_66578869	0/0	t0031	3394	1	0	0	0	0	1	copy fasta	MEIS1	chr2	66430125	66578869
MEIS1_chr2_66430125_66578869	0/0	t0032	3394	1	0	1	0	0	0	copy fasta	MEIS1	chr2	66430125	66578869
MEIS1_chr2_66430125_66578869	0/0	t0033	3394	1	0	0	1	0	0	copy fasta	MEIS1	chr2	66430125	66578869
MEIS1_chr2_66430125_66578869	0/0	t0034	3395	1	0	0	1	0	0	copy fasta	MEIS1	chr2	66430125	66578869
MEIS1_chr2_66430125_66578869	0/0	t0035	3392	1	0	1	0	0	0	copy fasta	MEIS1	chr2	66430125	66578869
MEIS1_chr2_66430125_66578869	0/0	t0036	3395	1	1	0	0	0	0	copy fasta	MEIS1	chr2	66430125	66578869
MEIS1_chr2_66430125_66578869	0/0	t0037	3393	1	1	0	0	0	0	copy fasta	MEIS1	chr2	66430125	66578869
MEIS2_chr15_36884204_37105549	1/0	t0001	4053	99	11	20	41	8	18	copy fasta	MEIS2	chr15	36884204	37105549
MEIS2_chr15_36884204_37105549	0/1	t0002	4051	81	11	20	35	2	12	copy fasta	MEIS2	chr15	36884204	37105549
MEIS2_chr15_36884204_37105549	0/0	t0003	4052	11	1	1	9	0	0	copy fasta	MEIS2	chr15	36884204	37105549
MEIS2_chr15_36884204_37105549	0/0	t0004	4050	9	9	0	0	0	0	copy fasta	MEIS2	chr15	36884204	37105549
MEIS2_chr15_36884204_37105549	0/0	t0005	4051	8	7	1	0	0	0	copy fasta	MEIS2	chr15	36884204	37105549
MEIS2_chr15_36884204_37105549	0/0	t0006	4054	8	0	2	2	1	3	copy fasta	MEIS2	chr15	36884204	37105549
MEIS2_chr15_36884204_37105549	0/0	t0007	4045	5	5	0	0	0	0	copy fasta	MEIS2	chr15	36884204	37105549
MEIS2_chr15_36884204_37105549	0/0	t0008	4052	4	0	0	4	0	0	copy fasta	MEIS2	chr15	36884204	37105549
MEIS2_chr15_36884204_37105549	0/0	t0009	4052	4	0	1	3	0	0	copy fasta	MEIS2	chr15	36884204	37105549
MEIS2_chr15_36884204_37105549	0/0	t0010	4052	3	3	0	0	0	0	copy fasta	MEIS2	chr15	36884204	37105549
MEIS2_chr15_36884204_37105549	0/0	t0011	4053	3	1	2	0	0	0	copy fasta	MEIS2	chr15	36884204	37105549
MEIS2_chr15_36884204_37105549	0/0	t0012	4051	3	3	0	0	0	0	copy fasta	MEIS2	chr15	36884204	37105549
MEIS2_chr15_36884204_37105549	0/0	t0013	4043	3	3	0	0	0	0	copy fasta	MEIS2	chr15	36884204	37105549
MEIS2_chr15_36884204_37105549	0/0	t0014	4054	2	2	0	0	0	0	copy fasta	MEIS2	chr15	36884204	37105549
MEIS2_chr15_36884204_37105549	0/0	t0015	4052	2	0	0	2	0	0	copy fasta	MEIS2	chr15	36884204	37105549
MEIS2_chr15_36884204_37105549	0/0	t0016	4051	2	0	2	0	0	0	copy fasta	MEIS2	chr15	36884204	37105549
MEIS2_chr15_36884204_37105549	0/0	t0017	4044	2	1	1	0	0	0	copy fasta	MEIS2	chr15	36884204	37105549
MEIS2_chr15_36884204_37105549	0/0	t0018	4044	2	2	0	0	0	0	copy fasta	MEIS2	chr15	36884204	37105549
MEIS2_chr15_36884204_37105549	0/0	t0019	4042	2	2	0	0	0	0	copy fasta	MEIS2	chr15	36884204	37105549
MEIS2_chr15_36884204_37105549	0/0	t0020	4051	1	1	0	0	0	0	copy fasta	MEIS2	chr15	36884204	37105549
MEIS2_chr15_36884204_37105549	0/0	t0021	4053	1	1	0	0	0	0	copy fasta	MEIS2	chr15	36884204	37105549
MEIS2_chr15_36884204_37105549	0/0	t0022	4053	1	0	0	1	0	0	copy fasta	MEIS2	chr15	36884204	37105549
MEIS2_chr15_36884204_37105549	0/0	t0023	4053	1	0	0	1	0	0	copy fasta	MEIS2	chr15	36884204	37105549
MEIS2_chr15_36884204_37105549	0/0	t0024	4053	1	0	0	0	0	1	copy fasta	MEIS2	chr15	36884204	37105549
MEIS2_chr15_36884204_37105549	0/0	t0025	4053	1	0	0	1	0	0	copy fasta	MEIS2	chr15	36884204	37105549
MEIS2_chr15_36884204_37105549	0/0	t0026	4053	1	0	1	0	0	0	copy fasta	MEIS2	chr15	36884204	37105549
MEIS2_chr15_36884204_37105549	0/0	t0027	4051	1	0	1	0	0	0	copy fasta	MEIS2	chr15	36884204	37105549