JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MEIS2_chr15_36884204_37105549	0/0	t0028	4051	1	1	0	0	0	0	copy fasta	MEIS2	chr15	36884204	37105549
MEIS2_chr15_36884204_37105549	0/0	t0029	4051	1	0	0	1	0	0	copy fasta	MEIS2	chr15	36884204	37105549
MEIS2_chr15_36884204_37105549	0/0	t0030	4051	1	0	0	1	0	0	copy fasta	MEIS2	chr15	36884204	37105549
MEIS2_chr15_36884204_37105549	0/0	t0031	4051	1	1	0	0	0	0	copy fasta	MEIS2	chr15	36884204	37105549
MEIS2_chr15_36884204_37105549	0/0	t0032	4053	1	0	0	0	0	1	copy fasta	MEIS2	chr15	36884204	37105549
MEIS2_chr15_36884204_37105549	0/0	t0033	4055	1	1	0	0	0	0	copy fasta	MEIS2	chr15	36884204	37105549
MEIS2_chr15_36884204_37105549	0/0	t0034	4054	1	1	0	0	0	0	copy fasta	MEIS2	chr15	36884204	37105549
MEIS2_chr15_36884204_37105549	0/0	t0035	4053	1	0	0	1	0	0	copy fasta	MEIS2	chr15	36884204	37105549
MEIS2_chr15_36884204_37105549	0/0	t0036	4043	1	1	0	0	0	0	copy fasta	MEIS2	chr15	36884204	37105549
MEIS2_chr15_36884204_37105549	0/0	t0037	4044	1	1	0	0	0	0	copy fasta	MEIS2	chr15	36884204	37105549
MEIS2_chr15_36884204_37105549	0/0	t0038	4052	1	0	0	0	0	1	copy fasta	MEIS2	chr15	36884204	37105549
MEIS2_chr15_36884204_37105549	0/0	t0039	4037	1	0	0	0	1	0	copy fasta	MEIS2	chr15	36884204	37105549
MEIS2_chr15_36884204_37105549	0/0	t0040	4037	1	1	0	0	0	0	copy fasta	MEIS2	chr15	36884204	37105549
MEIS3_chr19_47398124_47424527	0/0	t0001	894	73	9	17	35	3	9	copy fasta	MEIS3	chr19	47398124	47424527
MEIS3_chr19_47398124_47424527	1/0	t0002	894	67	35	11	13	3	4	copy fasta	MEIS3	chr19	47398124	47424527
MEIS3_chr19_47398124_47424527	0/0	t0003	894	19	9	1	5	0	4	copy fasta	MEIS3	chr19	47398124	47424527
MEIS3_chr19_47398124_47424527	0/0	t0004	895	9	1	1	5	0	2	copy fasta	MEIS3	chr19	47398124	47424527
MEIS3_chr19_47398124_47424527	0/0	t0005	895	8	2	2	4	0	0	copy fasta	MEIS3	chr19	47398124	47424527
MEIS3_chr19_47398124_47424527	0/0	t0006	894	7	1	2	0	3	1	copy fasta	MEIS3	chr19	47398124	47424527
MEIS3_chr19_47398124_47424527	0/0	t0007	895	6	2	3	0	0	1	copy fasta	MEIS3	chr19	47398124	47424527
MEIS3_chr19_47398124_47424527	0/0	t0008	895	6	3	1	2	0	0	copy fasta	MEIS3	chr19	47398124	47424527
MEIS3_chr19_47398124_47424527	0/0	t0009	895	3	0	1	0	0	2	copy fasta	MEIS3	chr19	47398124	47424527
MEIS3_chr19_47398124_47424527	0/0	t0010	895	3	0	0	2	1	0	copy fasta	MEIS3	chr19	47398124	47424527
MEIS3_chr19_47398124_47424527	0/0	t0011	895	2	0	2	0	0	0	copy fasta	MEIS3	chr19	47398124	47424527
MEIS3_chr19_47398124_47424527	0/0	t0012	895	2	0	0	1	0	1	copy fasta	MEIS3	chr19	47398124	47424527
MEIS3_chr19_47398124_47424527	0/0	t0013	894	2	0	0	2	0	0	copy fasta	MEIS3	chr19	47398124	47424527
MEIS3_chr19_47398124_47424527	0/0	t0014	894	2	2	0	0	0	0	copy fasta	MEIS3	chr19	47398124	47424527
MEIS3_chr19_47398124_47424527	0/0	t0015	894	2	0	2	0	0	0	copy fasta	MEIS3	chr19	47398124	47424527
MEIS3_chr19_47398124_47424527	0/0	t0016	895	2	0	1	0	0	1	copy fasta	MEIS3	chr19	47398124	47424527
MEIS3_chr19_47398124_47424527	0/0	t0017	895	2	0	2	0	0	0	copy fasta	MEIS3	chr19	47398124	47424527
MEIS3_chr19_47398124_47424527	0/0	t0018	896	2	2	0	0	0	0	copy fasta	MEIS3	chr19	47398124	47424527
MEIS3_chr19_47398124_47424527	0/0	t0019	895	1	0	0	1	0	0	copy fasta	MEIS3	chr19	47398124	47424527
MEIS3_chr19_47398124_47424527	0/0	t0020	895	1	0	1	0	0	0	copy fasta	MEIS3	chr19	47398124	47424527
MEIS3_chr19_47398124_47424527	0/0	t0021	896	1	1	0	0	0	0	copy fasta	MEIS3	chr19	47398124	47424527
MEIS3_chr19_47398124_47424527	0/0	t0022	896	1	0	0	1	0	0	copy fasta	MEIS3	chr19	47398124	47424527
MEIS3_chr19_47398124_47424527	0/0	t0023	897	1	1	0	0	0	0	copy fasta	MEIS3	chr19	47398124	47424527
MEIS3_chr19_47398124_47424527	0/0	t0024	897	1	0	0	0	0	1	copy fasta	MEIS3	chr19	47398124	47424527
MEIS3_chr19_47398124_47424527	0/0	t0025	898	1	0	0	1	0	0	copy fasta	MEIS3	chr19	47398124	47424527
MEIS3_chr19_47398124_47424527	0/0	t0026	895	1	0	1	0	0	0	copy fasta	MEIS3	chr19	47398124	47424527
MEIS3_chr19_47398124_47424527	0/0	t0027	895	1	1	0	0	0	0	copy fasta	MEIS3	chr19	47398124	47424527
MEIS3_chr19_47398124_47424527	0/0	t0028	895	1	0	1	0	0	0	copy fasta	MEIS3	chr19	47398124	47424527
MEIS3_chr19_47398124_47424527	0/0	t0029	895	1	0	1	0	0	0	copy fasta	MEIS3	chr19	47398124	47424527
MEIS3_chr19_47398124_47424527	0/0	t0030	896	1	1	0	0	0	0	copy fasta	MEIS3	chr19	47398124	47424527
MEIS3_chr19_47398124_47424527	0/0	t0031	895	1	0	1	0	0	0	copy fasta	MEIS3	chr19	47398124	47424527
MEIS3_chr19_47398124_47424527	0/0	t0032	894	1	1	0	0	0	0	copy fasta	MEIS3	chr19	47398124	47424527
MEIS3_chr19_47398124_47424527	0/0	t0033	894	1	1	0	0	0	0	copy fasta	MEIS3	chr19	47398124	47424527
MEIS3_chr19_47398124_47424527	0/0	t0034	896	1	0	0	0	1	0	copy fasta	MEIS3	chr19	47398124	47424527
MEIS3_chr19_47398124_47424527	0/0	t0035	895	1	0	1	0	0	0	copy fasta	MEIS3	chr19	47398124	47424527
MEIS3_chr19_47398124_47424527	0/0	t0036	895	1	0	1	0	0	0	copy fasta	MEIS3	chr19	47398124	47424527
MEIS3_chr19_47398124_47424527	0/0	t0037	895	1	0	1	0	0	0	copy fasta	MEIS3	chr19	47398124	47424527